| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0473 |
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| Symbol | dapD |
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| ID | 7388475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 401052 |
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| End bp | 401909 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650120 |
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| Product | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase |
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| Protein accession | YP_002548334 |
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| Protein GI | 222147377 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0998478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCTA TGGACCTCTC CTCTTTACAG ACCGTCATCG ATACCGCTTT CGACAATCGC
GACACCATTA CCCTGTCGAC CAAGGGCGAA GTGCGCGATG CTGTCGAGCA ATCGCTTGCC
CTGCTCGACC AGGGTAAGGT ACGGGTTGCC ACCCGTGGAG AGGATGGCCA ATGGACCGTG
CATCAATGGC TGAAAAAGGC TGTGCTGCTC TCCTTCCGTC TCAATGACAT GGAGGTCGTC
AAGGGCGGGC CGGGGGCTTC GACCTGGTGG GACAAGGTGC CGTCCAAATT CGAAGGCTGG
GGTGAAAACC AGTTCCGCGC CGCCGGTTTC CGCGCCGTGC CCAATGCGGT GGTGCGTCAC
TCGGCTTTCA TTGCCCCCAA TGCCATTCTG ATGCCGTCCT TTGTCAATCT CGGCGCTTAT
GTCGGCGAGG GCACCATGGT CGATACCTGG GCGACGGTAG GCTCCTGCGC CCAGATCGGC
CGCCATGTGC ATCTGTCGGG CGGCGTCGGC ATTGGTGGGG TGCTGGAGCC GATGCAGGCC
GGGCCGACCA TTATCGAGGA CAATTGCTTC ATCGGCGCGC GCTCCGAAGT CGTGGAAGGC
TGCATCATTC GTGAAGGCGC CGTGCTCGGC ATGGGTGTCT ATATCGGCAA ATCCACCAAG
ATCATCGACC GCGCCACCGG CGAGGTAATG TATGGTGAAG TGCCGCCGTA TTCCGTGGTT
GTCGCAGGCT CCATGCCATC GCCCAACACC ATGCCGAACG GCTTGCCGGC GCCCAGCCTC
TATTGCGCCG TGATCGTCAA ACGCGTCGAT GCCCAGACCC GCTCCAAGAC CGGTATCAAC
GAGCTGCTAC GCGACTGA
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| Protein sequence | MSAMDLSSLQ TVIDTAFDNR DTITLSTKGE VRDAVEQSLA LLDQGKVRVA TRGEDGQWTV
HQWLKKAVLL SFRLNDMEVV KGGPGASTWW DKVPSKFEGW GENQFRAAGF RAVPNAVVRH
SAFIAPNAIL MPSFVNLGAY VGEGTMVDTW ATVGSCAQIG RHVHLSGGVG IGGVLEPMQA
GPTIIEDNCF IGARSEVVEG CIIREGAVLG MGVYIGKSTK IIDRATGEVM YGEVPPYSVV
VAGSMPSPNT MPNGLPAPSL YCAVIVKRVD AQTRSKTGIN ELLRD
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