Gene Avi_0456 details

Gene Information

• Locus tag: Avi_0456
• Symbol: engB
• ID: 7388466
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 391736
• End bp: 392395
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650111
• Product: ribosome biogenesis GTP-binding protein YsxC
• Protein accession: YP_002548325
• Protein GI: 222147368
• COG category: [R] General function prediction only
• COG ID: [COG0218] Predicted GTPase
• TIGRFAM ID: [TIGR03598] ribosome biogenesis GTP-binding protein YsxC/EngB

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0574752
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGCAA CAAAGGCAAC GAGCGACCAG CCGCTGTTCG GCCGGCCATG GATTTTTATC 
CGAGGCGTGC CATCGATGAA ATTTCTGCCG CCGGAAGGCC CGCTGGAGAT TGCCTTTGCG 
GGGCGCTCCA ATGTGGGGAA ATCATCGCTG ATCAACGCCC TCGTCGGCCA GAAGGGTCTG 
GCGCGCACAT CCAATACGCC GGGCCGGACC CAGGAGCTGA ACTATTTCGT TCCCGAGGGC 
TATAGCGGCG AGGGCGACGA CCTGCCGCCG ATGGCGCTGG TCGATATGCC GGGCTATGGT 
TATGCCAAGG CGCCCAAAGA CCATGTGGAC GCGTGGACCA AGCTGGTCTT CGACTATCTG 
CGCGGAAGGG CGACGTTGAA GCGGGTTTAT CTGCTGATCG ACAGCCGCCA TGGTATCAAG 
GCCAATGATG AAGATGTGCT GACGCTGCTG GACAAGGCGG CGATGTCCTA CCAGATCGTG 
CTGACCAAGA CCGACAAGAT CAAGGAGGCG GGCGTGCCGC GTCTGATCGA GGAAACCCTC 
GAGAAAATCC GCAAGCGTCC GGCGGCCTAT CCCTTTGTGC TTTCGACGTC CTCGGAAAAG 
GACAAGGGAC TGAAAGAATT GCGTGCGGCG ATTTGCGAAA CCGTCGGGCA TTTCGGCTGA 

 

Protein sequence

MTATKATSDQ PLFGRPWIFI RGVPSMKFLP PEGPLEIAFA GRSNVGKSSL INALVGQKGL 
ARTSNTPGRT QELNYFVPEG YSGEGDDLPP MALVDMPGYG YAKAPKDHVD AWTKLVFDYL 
RGRATLKRVY LLIDSRHGIK ANDEDVLTLL DKAAMSYQIV LTKTDKIKEA GVPRLIEETL 
EKIRKRPAAY PFVLSTSSEK DKGLKELRAA ICETVGHFG