| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0455 |
|---|
| Symbol | |
|---|
| ID | 7388465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 389787 |
|---|
| End bp | 391649 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643650110 |
|---|
| Product | putative inner membrane protein translocase component YidC |
|---|
| Protein accession | YP_002548324 |
|---|
| Protein GI | 222147367 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.107055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGAAA ACAACCGCAA TTATCTCATC GCGATTGCAC TGTCGGTGAT GGTCGTCCTG
GGCTGGCAGT TCTTCTACAT GAACCCGCGG ATCGAGGCGC AAAGACAGGC TGAACAGGCC
CAGCAGGCCC AACAGGCAAA GACCCCGGCC ACTCAGGCAA CGCCGGGTGC TGCCGTCAAT
GGCGCGCTGC CGGGTCAGAC CCAGGCCAGC GCCACGACAA GCCGCGAAGA CGCTGTCGCC
AAGTCGGCTC GGGTTGAAAT CAATACCGAA GCGCTGTCCG GCTCCATCAA TCTCACGGGT
GCACGGCTCG ACGATCTTCG CCTGAAGGGC TATCACGAGA CCGTCGACAA GACGAGCCCG
ATCATTACCC TGCTCAATCC GGCCGATACC AAGGACGGTT ATTTCGCCGA AATCGGCTTT
ATCGGCGGCG AGAAATCCGG CAGCGTGCCA GGACCATCGA CGGTCTGGAC GGTCAAGGAT
GGCCAGACGC TGACCGAAAC CACCCCGGTG ACGCTGACCT ATACCAATGA AACCGGCCTG
ACCTTCAGCC GGAAGATCTC GGTCGACAAG CATTATATGT TCACGATCGA AGACACGGTT
GCCAATGCCG GGGGTGCTGA CATCAGCCTT GCCCCCTATG GCCGTGTTAC CCGCTACAAC
AAGCCCGCCG TTGCCTCCAC CTATGTGCTG CATGAAGGCT TTATCGGCGT GATGGGCTCG
GGCGATGGTA AGTTTGCCTC GGTCGAAGCA AAATATGCGG CTATCGAAAA AGAAAACGAG
ACCAACGCCA AGGCAACCGG TGGCTGGCTA GGGATTACCG ATAAATATTG GGCAGCGACC
CTCGTGCCAC CGCAATCGCT GGCTTATGAT TCCCGCTTCT CGCATTTTAC CGATGGTCAG
GCTCGCTTCC AGGCGGATTA CAAGAACGAT CCGGTGACGA TTGCACCGGG CCAATCGACC
ACGCTGAAGA CGCTGCTGTT TGCCGGCGCC AAGGAAGTTC CTGTTGTTGA TGGCTATGCG
CTCGACAAGT CCTGGTTCGG ACAGGCGTTT ACCAATCTGT TTGCCGGTGC CAAAGACACG
GTACAACAAT ATGACATTCC TCGTTTCGAT CTTCTGATCG ATTGGGGCTG GTTCTATTTC
CTCACCAAGC CGATGTTTAA GCTGATGGAC TTCTTCTTCC GTCAGGTTGG CAATTTTGGC
GTGGCTATCC TGCTGACCAC AATTGCCGTC AAACTGTTGT TCTTCCCGCT GGCCAGCAAG
CAATATGCGT CCATGGCCAA TATGAAGCGC ATGCAGCCAA AGATGGAAGA GTTGAAGGCC
AAGCACGGCG ATGACCGTAT GGCCCTGCAA CAGGCGATGA TGGAGCTCTA CAAGACCGAG
AAGATCAATC CGGTCGCCGG CTGCTGGCCG CTGCTGTTGC AGATCCCGGT GTTTTTCGCG
CTCTACAAAG TGATTTATAT CACTATTGAA ATGCGCCACG CGCCGTTCTT TGGCTGGATT
CATGACTTGT CGGCTCCAGA TCCAACCAGC TTTGTCAACC TGTTCGGCCT GCTGCCGTTC
GAGTCGCCCG CCATGTTGCA TCTCGGCATC TGGCCGATCA TCATGGGCAT CACCATGTTC
GTGCAGATGC GTATGAACCC GACGCCGCCG GACCCGACCC AGGCCATGCT GTTCAACTGG
ATGCCGCTGG TCTTCACCTT CATGCTCGGG TCTTTCCCGG CTGGTCTGGT GATTTATTGG
GCATGGAACA ATACCCTGTC GGTGTTGCAG CAATCGATCA TCATGAAACG TCACGGTGTG
AAGATCGAAC TGTTTGATAA TCTCAAGGGG CTTTTCCAGC GAAAATCCGC TAAGACGAAG
TAA
|
|---|
| Protein sequence | MMENNRNYLI AIALSVMVVL GWQFFYMNPR IEAQRQAEQA QQAQQAKTPA TQATPGAAVN
GALPGQTQAS ATTSREDAVA KSARVEINTE ALSGSINLTG ARLDDLRLKG YHETVDKTSP
IITLLNPADT KDGYFAEIGF IGGEKSGSVP GPSTVWTVKD GQTLTETTPV TLTYTNETGL
TFSRKISVDK HYMFTIEDTV ANAGGADISL APYGRVTRYN KPAVASTYVL HEGFIGVMGS
GDGKFASVEA KYAAIEKENE TNAKATGGWL GITDKYWAAT LVPPQSLAYD SRFSHFTDGQ
ARFQADYKND PVTIAPGQST TLKTLLFAGA KEVPVVDGYA LDKSWFGQAF TNLFAGAKDT
VQQYDIPRFD LLIDWGWFYF LTKPMFKLMD FFFRQVGNFG VAILLTTIAV KLLFFPLASK
QYASMANMKR MQPKMEELKA KHGDDRMALQ QAMMELYKTE KINPVAGCWP LLLQIPVFFA
LYKVIYITIE MRHAPFFGWI HDLSAPDPTS FVNLFGLLPF ESPAMLHLGI WPIIMGITMF
VQMRMNPTPP DPTQAMLFNW MPLVFTFMLG SFPAGLVIYW AWNNTLSVLQ QSIIMKRHGV
KIELFDNLKG LFQRKSAKTK
|
|---|
| |