| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0422 |
|---|
| Symbol | |
|---|
| ID | 7388437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 357905 |
|---|
| End bp | 358849 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643650081 |
|---|
| Product | transcriptional regulator LysR family |
|---|
| Protein accession | YP_002548296 |
|---|
| Protein GI | 222147339 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAC TCAATTTGGT GCATCTCAAT GGATTGCGGG CCGTGGAGGC TGTTGGTCGG
CTAGGCTCTC TGCAAGCGGC TGCCAGCGAA CTTGGCGTTT CGATCGGTGC CATCAGCCAG
CAGGTCATCA AGGCTGAGCA GCAGTTGCAG TTGCAATTAT TCGAGCGAAC CAGCCGCGGC
ATGGTGCCGA CAGATGTGGC TGAGCCGGTG CTTGACCGTT TGAGTGCGGG CTTTCGACAT
TTGTCGGGGG CAGTGGCGCT TGCGCTGAAG AGCGATGATA CGGTTTTAAC GATCTCGGTG
GCGCCGGTCT TTGCTGCACG CTGGTTGGTG CATCGCATTG GTGCGTTTTC AGAACGGTTT
CCGACGATCC GTCTTAGAAT GGAGGCAAGC GACCGGTTAA TCGATCCATC AAGCTCCGAT
GTCGATCTGT GTATTCGGGT CGGGCGTGGT GACTGGCCCG GTGTACGGGC CGAGTTACTG
CTGGAACAGA AGGTTTTTCC GGTCTGCACA CCTGCCATGG CAAAGCGCCT GCAATCACCA
GCCGATCTCC TGGAATTGCC GATTGTGGAG GATGGCCGGG CGATGTTCAG TTGGGATGTA
TGGCTGGCCG CTGCAGGACT TCCCGGGCGA TCGGTCTGTA CACGGCATGT GTTTAGCGAA
GCCTCTCTGT GTCTGGATGC TGCACTGGCC GGCCAAGGTG TCTTGCTGGC CTGGCAGACC
ATTGCTTCGC AGCAATTGCA GCAGGGGCAG TTGGTAGCAC CCTTCGGCCC GGCAGTGCCT
ACAGGGCTTG CCCATTATTT CGTCAGCCCA GAAGGCGCAC GCCGCAATGA CAAGGTCGAT
GCCTTCAAGC GGTGGCTGCG CGATGAGCTT CACGAGGATA TGACCCGCCT TGCCAAGGCA
ATTCCTTTTC TAGGCGGCCC ATTTCTGAAA GGCGAGTGCG GTTGA
|
|---|
| Protein sequence | MSKLNLVHLN GLRAVEAVGR LGSLQAAASE LGVSIGAISQ QVIKAEQQLQ LQLFERTSRG
MVPTDVAEPV LDRLSAGFRH LSGAVALALK SDDTVLTISV APVFAARWLV HRIGAFSERF
PTIRLRMEAS DRLIDPSSSD VDLCIRVGRG DWPGVRAELL LEQKVFPVCT PAMAKRLQSP
ADLLELPIVE DGRAMFSWDV WLAAAGLPGR SVCTRHVFSE ASLCLDAALA GQGVLLAWQT
IASQQLQQGQ LVAPFGPAVP TGLAHYFVSP EGARRNDKVD AFKRWLRDEL HEDMTRLAKA
IPFLGGPFLK GECG
|
|---|
| |