Gene Avi_0408 details

Gene Information

• Locus tag: Avi_0408
• ID: 7388428
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 349475
• End bp: 350140
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643650072
• Product: hypothetical protein
• Protein accession: YP_002548287
• Protein GI: 222147330
• COG category: [S] Function unknown
• COG ID: [COG5375] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.47995
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCAAGC GTTTAGATAA AGGTGCCCTA GAGCCGCGCC CACCTGCCCC CGATACCTCC 
TATCGCAAGG CGGTCGGTCA CTCGCATCGC GTCAGGCGGC TGCGCATTGC CTTGCCGGCT 
TTGGCCGTCG TGCTCTCGCT TGGCTTTGTT GCTGTTTCCG TCGTCAGGGC CTACCTGCCC 
GACAACATCA AGATCGAGGG CGCCAAGATC GAGGATGGCA AGGTCGTCAT GGCCAAGCCA 
GCCATATCCG GACGCAATTC AAACGGCGCG CCCTATTCGA TGAATGCCGT GCGGGCGCTG 
CAAGATATCA AGAACCCCAA CCTCATCACG CTGGAAACGA TTACAGCGAC CATGCCGGTC 
AATGATGACA CCTCCGCCGA TATCAAGGCA CAAAGGGGCA CCTATGACCG CTCTACCGAC 
AAGATGGTGC TGGACAGACC CTTCACGATC CATCTCTCCA GCGGTGTGGA CGCAGAGTTT 
CAATCCGCCG ATCTTGACGT GAAAGCGGGA AAGCTTAAGA CAAATCAACC GGTCTCCATC 
AAGACGAAAG AGTCATCAAT CGTTGCACAG TCGATGGATA TGACCGATAA GGGACAGACA 
ATCACGCTGA CGGGCGCGGT CCGATTGAAT ATCGCACCGA CCGCCCTGCA GAAACCGGGC 
AACTGA 

 

Protein sequence

MLKRLDKGAL EPRPPAPDTS YRKAVGHSHR VRRLRIALPA LAVVLSLGFV AVSVVRAYLP 
DNIKIEGAKI EDGKVVMAKP AISGRNSNGA PYSMNAVRAL QDIKNPNLIT LETITATMPV 
NDDTSADIKA QRGTYDRSTD KMVLDRPFTI HLSSGVDAEF QSADLDVKAG KLKTNQPVSI 
KTKESSIVAQ SMDMTDKGQT ITLTGAVRLN IAPTALQKPG N