Gene Avi_0406 details

Gene Information

• Locus tag: Avi_0406
• Symbol: yhbN
• ID: 7388427
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 348902
• End bp: 349465
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643650071
• Product: cell envelope biogenesis protein YhbN
• Protein accession: YP_002548286
• Protein GI: 222147329
• COG category: [S] Function unknown
• COG ID: [COG1934] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03002] lipopolysaccharide transport periplasmic protein LptA

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGCACA GCCACCGTCG CCTTTCCTTC CGCGTTGCTT GCGCCACGCT GACCGCAGGC 
CTTGTCGCGA CCGCAGCCGC AACCGGCGCG TTTGCCCAGT CCGCCACCAG CAACATGAAC 
AGCCTGAAAC TGTCCGGCGA CAAGCCGATC CAGATCGAAA GCGATGCATT GGAAGTGCAT 
CAGCAAGAGA ACAAAGCCAA TTTCAACGGC AATGTGAAGG TGGTTCAGGG CACCACCACG 
ATGCGGTCCG GCACGATGGT GGTGAAATAC AAGGGCCAGG GCGCGGCTGT GACCAGCGGC 
GACGCCAAGA TCGACACGAT CGATGTGGCC GATAACGTCA TTCTCAATAC CGAAACCCAG 
CAGGCCACGG CCGACAAGGG CCATTTCGAC ATGAACACCC AGATCTTTAC GCTGGATGGC 
GACAAGGTCG TGCTGTCGGA AGGCGGCAAT GTGTTCGTCG GCTGCAAGCT CACCGTCCAT 
ATGACGACGG GCGAAGCCAA GCTCGACAGT TGTGGCAAGC GCGTGCAAAT CCAGCTGGAT 
CCCAAGTCCA AGCAGAAACC CTGA 

 

Protein sequence

MTHSHRRLSF RVACATLTAG LVATAAATGA FAQSATSNMN SLKLSGDKPI QIESDALEVH 
QQENKANFNG NVKVVQGTTT MRSGTMVVKY KGQGAAVTSG DAKIDTIDVA DNVILNTETQ 
QATADKGHFD MNTQIFTLDG DKVVLSEGGN VFVGCKLTVH MTTGEAKLDS CGKRVQIQLD 
PKSKQKP