| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0402 |
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| Symbol | |
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| ID | 7388424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 345382 |
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| End bp | 345948 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643650068 |
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| Product | sigma-54 modulation protein |
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| Protein accession | YP_002548283 |
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| Protein GI | 222147326 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
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| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGTAC GCGTAACCGG CAAACATATG GAAATCGGCG AATCTTTCCG GCAACGGATA
GAAGTCCAGA TCACTGACGC CGTAAGCAAA TACTTTGACG GAGGGTATTC CAGTCAGGTC
ACGGTGACAA AATCAGCCTC GCGGTTTTCC GCAGACTGCG CCCTGCACCT CGATACCGGT
ATAAACCTGC ATGCAACCGG CACAGCCGTC GATCCGCAAG TCGCCTTCGA CACCGCCGCA
GAGCGGATCG AAAAGCGCCT GCGGCGCTAC AAGCGCAAGC TGAAGGATCA CCATATCCCA
ACCAACAACT TCGAAATCAG CTATACGGTC ATGGACCCGG TTTCAGAAGA AGACGAGGAT
GTGCCGGAGG ATTTTGCCCC GACCATCGTG GCCGAAAGCA CCAAGAAGGT CAAAACCATG
TCCGTTGCCA CCGCCGTCAT GGCGCTGGAT ATGACGGATG AGCCCATTGT ACTGTTCCGC
AGCCCTGGCA AGGACGAGCT GAACATTGTC TATCGCCGCA ATGACGGTAA TATTGGCTGG
ATCGATTCCG CCGCAATCAA GGGCTGA
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| Protein sequence | MSVRVTGKHM EIGESFRQRI EVQITDAVSK YFDGGYSSQV TVTKSASRFS ADCALHLDTG
INLHATGTAV DPQVAFDTAA ERIEKRLRRY KRKLKDHHIP TNNFEISYTV MDPVSEEDED
VPEDFAPTIV AESTKKVKTM SVATAVMALD MTDEPIVLFR SPGKDELNIV YRRNDGNIGW
IDSAAIKG
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