Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0401 |
Symbol | ptsN |
ID | 7388423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 344845 |
End bp | 345309 |
Gene Length | 465 bp |
Protein Length | 154 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643650067 |
Product | PTS IIA-like nitrogen-regulatory protein PtsN |
Protein accession | YP_002548282 |
Protein GI | 222147325 |
COG category | [G] Carbohydrate transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
TIGRFAM ID | [TIGR00848] PTS system, fructose subfamily, IIA component [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCTTGG CAGATTTGCT ACAGCAAGAT GCGATATTGC CCGTCCTCAG GGTCAATTCC AAAAAACAAC TTCTCCAGGA ACTGGCTGCC AAAGCCTCAA AACTGATCGG TATTCCCGAA CGGGAAATCT TTGACGTTAT TTTGCAGCGG GAAAAGCTCG GTTCTACCGG TGTCGGCAAT GGCATTGCCA TTCCCCATGG CAAGCTGACG AGCATTTCCA CCATTCAAGG CGTCTTCGCC CGCCTGGAAA CGCCAATCGA TTTTGAAGCG CTGGACGAGC AGCCCGTCGA TCTGGTCTTC CTGCTGCTGG CACCCGAAGG GGCCGGTGCC GATCATTTGA AAGCCTTGTC GCGCATCGCC CGCGTGCTTC GCGATCAGGA CCTGGTTGCC AAGCTGCGCG CCAGCGACAG CGCCACCGCC ATCTATACCT TCCTGAACCA GGACCAGGCC TCGAACGCCG CCTGA
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Protein sequence | MALADLLQQD AILPVLRVNS KKQLLQELAA KASKLIGIPE REIFDVILQR EKLGSTGVGN GIAIPHGKLT SISTIQGVFA RLETPIDFEA LDEQPVDLVF LLLAPEGAGA DHLKALSRIA RVLRDQDLVA KLRASDSATA IYTFLNQDQA SNAA
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