| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0399 |
|---|
| Symbol | grpE |
|---|
| ID | 7387840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 344081 |
|---|
| End bp | 344695 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643650066 |
|---|
| Product | heat shock protein GrpE |
|---|
| Protein accession | YP_002548281 |
|---|
| Protein GI | 222147324 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0576] Molecular chaperone GrpE (heat shock protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG AAACAGCTAA AAACGGACCT GACGCTGCCG CAGACGCGCA GATTGAACCC
CAGGTACAGG AAGAGACCAA TTCGACCGCT GAGGATGCCG GGCAGGATAA TAACCCGACA
GCTGCCCTGC AGGCTGAAAA TGCGGAGTTG CGTGATCGCT TCCTGCGTCT GGCGGCTGAA
ATGGACAATC TGCGCCGCCG CACCGAGCGC GATGTCAAGG ATGCCAAGTC CTATGCGGTA
ACCGCTTTTG CCCGTGACAT GCTGGCCGTG TCCGACAATC TGCGCCGCGC CATCGACGCT
GTGCCTGCTG AGGCCAAGGA AGAGGCGCAA GCCGGTCTGA CGGCATTGAT CGAAGGTGTC
GAGATGACCG AGCGGGCGAT GTTGTCAACG CTCGAGCGCC ATGGTGTCCG CAAGATCGAG
CCGGAAGGCC AGAAATTCGA TCCGAATTTC CATCAGGCGA TGTTCGAAAT TCCCAATCCG
CAAGTGCCCA ACAATACGGT CGTGCAGGTT GTTCAGCCCG GCTACACGAT TGGCGACCGG
GTGCTGCGTC CGGCTATGGT TGGCGTTGCC AAGGGTGGCC CCAAGGCAGA GACGGCGCAA
GCTGCCGATG CCTAA
|
|---|
| Protein sequence | MTDETAKNGP DAAADAQIEP QVQEETNSTA EDAGQDNNPT AALQAENAEL RDRFLRLAAE
MDNLRRRTER DVKDAKSYAV TAFARDMLAV SDNLRRAIDA VPAEAKEEAQ AGLTALIEGV
EMTERAMLST LERHGVRKIE PEGQKFDPNF HQAMFEIPNP QVPNNTVVQV VQPGYTIGDR
VLRPAMVGVA KGGPKAETAQ AADA
|
|---|
| |