Gene Avi_0398 details

Gene Information

• Locus tag: Avi_0398
• Symbol: hrcA
• ID: 7387839
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 342899
• End bp: 343981
• Gene Length: 1083 bp
• Protein Length: 360 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650065
• Product: heat-inducible transcription repressor
• Protein accession: YP_002548280
• Protein GI: 222147323
• COG category: [K] Transcription
• COG ID: [COG1420] Transcriptional regulator of heat shock gene
• TIGRFAM ID: [TIGR00331] heat shock gene repressor HrcA

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGAAAA ACCCAATTAC CGCAGGCGAT GTGTCAATGG CACTGGATGA GCGATCCAGG 
GAGATCTTTC GTCGAATCGT CGAGACCTAT CTGGAATCCG GTGAACCGCT TGGATCGCGC 
AATCTGTCGC GTATTCTGCC GATGTCGCTG TCGCCCGCCT CAGTGCGCAA TGTGATGAGC 
GACCTGGAAG AGCTGGGCCT GATCTACTCC CCCCATATCA GCGCCGGGCG CTTGCCGACT 
CAGACGGGGT TGAGGTTCTT CGTCGATGCT TTCATGCAGG TCGGTCGCTT GTCGGAGCAA 
GATCGCGGCT CGATAGAGCG GCAGATGCGC TCCTCGGAAG ACCAGCCGAT GGAAACGCTC 
TACAACGAAG CCAGTCGTAT GCTGTCTGGC CTGTCACGTG GTGCGGGCCT GGTGGTGGCG 
GCGAAATCCG ATCCGGTGCT GAAACACGTC GAATTCATCC GACTGGAGCC GACCAAGGCG 
CTGGCAGTGC TGGTCGGTGA GTTTAACCAG GTCGAAAACC GGATCATCGA ACTCCCGGCG 
GGCATCACAG CCTCGCAATT GACCGAGGCG GCCAATTTCC TCAATGCGCA TCTGTCCGGC 
CAGACGCTGC ATGAAGTGCG CGGCCAACTG GTCCAGTTGA AGGATCAGGT GGCCAGCGAG 
CTGGATGTTC TCTCCCAGGA TCTCGTGCAG CGTGGGCTGG CGGTCTGGTC CGGCGGCGAG 
GGCGACAAAC CGACCCGGTT GATCGTGCGT GGCCGCGCCA ATCTGCTGGA AGGTCTGGCC 
GGCGTCGAGG ATGTGGACCG GCTGCGGCTG CTGTTTGATG ATCTGGAGCG TAAGGAAAGC 
CTGATCGAGA TTCTCAACCT GGCCGAAAGC GGGCCTGGTG TCAGAATTTT CATTGGTTCG 
GAGAACAAGC TGTTTTCGCT CTCCGGGTCG TCACTGATCG TCGCGCCCTA CCGCGACGGC 
GACGACCGCA TTGTCGGGGC CGTCGGCGTG ATTGGTCCGA CCCGCCTCAA CTATTCCCGT 
ATCGTGCCGA TGGTGGATTA TACCGCCCAG GTGATGGCCA AGATGACCCG CAGCGGCCAC 
TGA 

 

Protein sequence

MGKNPITAGD VSMALDERSR EIFRRIVETY LESGEPLGSR NLSRILPMSL SPASVRNVMS 
DLEELGLIYS PHISAGRLPT QTGLRFFVDA FMQVGRLSEQ DRGSIERQMR SSEDQPMETL 
YNEASRMLSG LSRGAGLVVA AKSDPVLKHV EFIRLEPTKA LAVLVGEFNQ VENRIIELPA 
GITASQLTEA ANFLNAHLSG QTLHEVRGQL VQLKDQVASE LDVLSQDLVQ RGLAVWSGGE 
GDKPTRLIVR GRANLLEGLA GVEDVDRLRL LFDDLERKES LIEILNLAES GPGVRIFIGS 
ENKLFSLSGS SLIVAPYRDG DDRIVGAVGV IGPTRLNYSR IVPMVDYTAQ VMAKMTRSGH