Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0397 |
Symbol | rph |
ID | 7387838 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 341892 |
End bp | 342611 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643650064 |
Product | ribonuclease PH |
Protein accession | YP_002548279 |
Protein GI | 222147322 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0689] RNase PH |
TIGRFAM ID | [TIGR01966] ribonuclease PH |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACCTT CAGGCAGAAA AACCGACCAG ATGCGCAAGA TATCGTTCGA GCGCAATTTT TCCAAACACG CCGAAGGCTC TTGTCTCGTC AAGTTTGGCG ATACCCATGT CCTGTGCACG GCAAGCCTTG AAGACCGCAC CCCGCCCTGG CTGCGCAACA CCGGCAAGGG CTGGGTGACG GCGGAATACG GCATGTTGCC GCGCGCCACC GGCGAGCGGA TAAAACGTGA AGCGTCCTCC GGCAAGCAGA GCGGCCGTAC CCAGGAAATC CAGCGGCTGA TCGGCCGTTC ACTGCGCGCC GTGGTCGATC TGGAAGCCCT GGGCGAACGG CAGATCTCGC TTGATTGCGA CGTGATCCAG GCCGATGGCG GCACCCGCAC AGCCTCGATT ACCGGCGCAT GGATTGCCTT GCACGATTGC CTGAAATGGA TGGAATCGCG CAATATCATC AAGGTGGACC GGGTGCTGAA GGACCATGTC GCGGCGATTT CCTGCGGTAT TTTCGCCGCC CAGCCAGTGA TCGACCTGGA CTATCTGGAG GACTCTGCCG CCGAAACCGA TGCCAATTTC GTCATGACCG GCACAGGCGG CATTGTCGAG ATCCAGGGCA CCGCCGAAGG CAAGCCGTTC AGCCAGGAAG AATTCCTGAC CCTTCTCGGC CTTGCCCAGA CAGGCATTGC CGAATTGGTG GACCTGCAAA AACAGGCGAT TGCCGGATAA
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Protein sequence | MRPSGRKTDQ MRKISFERNF SKHAEGSCLV KFGDTHVLCT ASLEDRTPPW LRNTGKGWVT AEYGMLPRAT GERIKREASS GKQSGRTQEI QRLIGRSLRA VVDLEALGER QISLDCDVIQ ADGGTRTASI TGAWIALHDC LKWMESRNII KVDRVLKDHV AAISCGIFAA QPVIDLDYLE DSAAETDANF VMTGTGGIVE IQGTAEGKPF SQEEFLTLLG LAQTGIAELV DLQKQAIAG
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