| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0330 |
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| Symbol | tspO |
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| ID | 7387781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 284023 |
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| End bp | 284487 |
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| Gene Length | 465 bp |
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| Protein Length | 154 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643650007 |
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| Product | tryptophan-rich sensory protein |
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| Protein accession | YP_002548222 |
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| Protein GI | 222147265 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3476] Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.58959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGTAACG CTCTCACCAA TCTCATCTTC ATGGCCGCCG TCACCGGTAT CGGCACAATG
ATCGGGCTGA CCAATCTGCC GGGCGACTGG TATGACGGGT TGGAGAAGCC ATTCTTCAAT
CCGCCGGGCT GGATCTTCGG GCCGGTCTGG ACCGTGCTTT ACGTGCTGAT CGGCCTTGCG
GGTGCTCGGA TCTGGCAGCG GACGCGGCAA TCGCGGGGCG CATCGCGCGC CATGGCGCTG
TGGTTTGGCC AGATGCTGCT GAATTTCCTG TGGTCTCCGG CGTTCTTCGG TGCACAGAGC
ACCGGTCTCG CCCTGATCGT CATTCTGCCG ATGCTGGCGC TGATCCTTGC CTTTGTCTGG
CAGGTCCGGC GCCTGGACCG GGTGGCAATG CTCTCCTTCA TCCCCTATGC CGTCTGGGTT
GCTTTTGCCA CCGTGCTGAA CGCGGCGCTT TTCCTGCTGA ATTGA
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| Protein sequence | MRNALTNLIF MAAVTGIGTM IGLTNLPGDW YDGLEKPFFN PPGWIFGPVW TVLYVLIGLA
GARIWQRTRQ SRGASRAMAL WFGQMLLNFL WSPAFFGAQS TGLALIVILP MLALILAFVW
QVRRLDRVAM LSFIPYAVWV AFATVLNAAL FLLN
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