Gene Avi_0328 details

Gene Information

• Locus tag: Avi_0328
• Symbol: pfs
• ID: 7387779
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 282827
• End bp: 283465
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643650005
• Product: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
• Protein accession: YP_002548220
• Protein GI: 222147263
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0775] Nucleoside phosphorylase
• TIGRFAM ID: [TIGR01705] 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATTTG AACTGAAATC GGTTTGCAGC AAGTCCATTC TGTTCGTCAT GGCAGTCGAT 
GCCGAATATG GCCCGCTCCT GCGCCTGCGC ATCCAGCCGC TGATGACCGG GGTTGGCCCG 
GTGGAAAGCG CCATCGCCAC CACCAATGCC CTAAGAGACC TCCAGGCAGC AGGGACGCTT 
CCCGATCTCG TCGTCTCGCT CGGTTCGGCA GGCTCGGCAC GGCTGGAACA GACCGAGGTC 
TACCAGGTCT CCTCGGTCGC CTACCGGGAT ATGGACGCCT CGCCGCTCGG TTTCGAGAAA 
GGCTGTACGC CGTTCCTCGA TCTGCCTGCT ACGGTGGACC TGCCGCTGCG CATTCCCGGC 
GTTGCCGTGG CCAGCCTGTC GACCGGCGGC AATATCGTCT CAGGCCCGGT CTATGACAGC 
ATCGCCGCCG ATATGGTCGA CATGGAAACC TATGCGGTGC TGCGCGCCTG TCAGGCCTTC 
AACCTGCCGC TGATCGGCCT GCGCGGTATT TCCGATGGCA AGGCGGAACT GAAACATGTC 
GGCGACTGGA CGGAGTATCT GCATGTCGTT GACCGCAACC TGGCCCAAGC GGTGGACGCG 
CTGGTCAAGG CAGTGGAAGA CGGCACCTTC TGGTTCTGA 

 

Protein sequence

MTFELKSVCS KSILFVMAVD AEYGPLLRLR IQPLMTGVGP VESAIATTNA LRDLQAAGTL 
PDLVVSLGSA GSARLEQTEV YQVSSVAYRD MDASPLGFEK GCTPFLDLPA TVDLPLRIPG 
VAVASLSTGG NIVSGPVYDS IAADMVDMET YAVLRACQAF NLPLIGLRGI SDGKAELKHV 
GDWTEYLHVV DRNLAQAVDA LVKAVEDGTF WF