| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0323 |
|---|
| Symbol | |
|---|
| ID | 7387776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 278802 |
|---|
| End bp | 279959 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643650002 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002548217 |
|---|
| Protein GI | 222147260 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5621] Predicted secreted hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAGC ATCTTCGACT TGAAAAATTG AAAGATAGCA AAATGAGCGA TTTGAACAAA
GATTTCCCCC TTCTGTCGCA AAAGGCCCGC AGACGGGCGG TGCTTGGCGG GGGCTTGGCG
CTTGGGGCCT TCAGTCTCAC AGCGACCTCT GGCTTGGGCG CACCCATCGC CACCGGCACG
GCCCGCTCCA CATCCGGCAC GCCGCTGTTT GTCGATACGG TCAAGGACCT GGCTTCTCAT
CCCTTGACCG TTCTGGAATC CTGGTATGTC AATGCGGCCT TCGAAAGTCG GGGCAAGATT
GTCGGTTTCG AATGGCATCA AAGCGTCACC CCACAGGGCA GCATGACCGA GTTCCTGCTG
ATGAACGGAT CTGACGGCAT CTGGCGACCG CAAGTCGCCG CAGAACCGGC ATCGGATAAA
GTCGGCGCTG CAACGACGGA ATGCCATGTC TATTCAAGCC TCGGCACGCT GAAGGGGGAC
CGGTCCCAGT TTCAGCTCAA GCTCGGATCG GGACAGAACT CCGTCGACGT GGTGCTGACG
CCGCAGCGAG AGGAACTCTA TAACGGCACA ACCGGCCTTC TCCGCTTTCT CGGCTCTGAT
TCCTATGAGT TTGCCTTCCC CAACATGCGG GCCAAGGGAT CGATGACCAT TGATGGCGAC
GTGTTTCCAG TCGATGCGAA ATCGGTGTGG TTTGATCGGC AATGGGCCAA GTCGGAAGCC
GCCGACCCGC AAGAGCAGGC GAAAAAGGCT GAACAGATCA ATCAATCTCA CTGGACGTGG
CTGGGACTGA CGTTCGGGGC ATCAGACAAA TGCGCGATTT CATTCTGGGA TGTCATGGAA
CCCAACCAGC GCTCGACCTT CCTGACCTAT TTACGCGAGG ACGGGGTGCA GATGAATGTC
GATGCGCAGG TGGAATACGA TCGTATCTGG ACAAGCAGCG ATACCGGGCA GCGTTATCCT
GCTGTTGCGC ATATAACCGC GCCAGCAATC AATCTCGACA TTGTGCTGAC AGCGATGCTT
GAGCGACCAG AATTTGTCTA TCAACCAGGA CAAGGGCATA GCGGATGCCA GTCACTCTGC
CTGGTGAAGG GCAAAATCGG CGCGAACATC GTCAACAAGC CGGCTATCCT GGAACTTATT
GGCGGTATCG ACCTCTGA
|
|---|
| Protein sequence | MLKHLRLEKL KDSKMSDLNK DFPLLSQKAR RRAVLGGGLA LGAFSLTATS GLGAPIATGT
ARSTSGTPLF VDTVKDLASH PLTVLESWYV NAAFESRGKI VGFEWHQSVT PQGSMTEFLL
MNGSDGIWRP QVAAEPASDK VGAATTECHV YSSLGTLKGD RSQFQLKLGS GQNSVDVVLT
PQREELYNGT TGLLRFLGSD SYEFAFPNMR AKGSMTIDGD VFPVDAKSVW FDRQWAKSEA
ADPQEQAKKA EQINQSHWTW LGLTFGASDK CAISFWDVME PNQRSTFLTY LREDGVQMNV
DAQVEYDRIW TSSDTGQRYP AVAHITAPAI NLDIVLTAML ERPEFVYQPG QGHSGCQSLC
LVKGKIGANI VNKPAILELI GGIDL
|
|---|
| |