| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0314 |
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| Symbol | |
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| ID | 7387769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 268894 |
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| End bp | 269898 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649995 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenases family protein |
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| Protein accession | YP_002548210 |
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| Protein GI | 222147253 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.907206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGC GGAAAAAGAC CAAGGTTTAC ATCACGCGCA AACTGCCGGA CGCAGTAGAA
ACCCGCATGC GGGAATTGTT CGAGGCAGAG TTGAACATTG ACGACACGCC GCGCAGCCGG
GACGCCCTGA TGGATGCGGT GAAAACCTGT GATGTTCTGG TGCCGACCGT GACCGACCGA
ATCGATGCCG GATTGATCGA GGCGGCTGGC CCGCAACTGA AACTGATTGC CAGTTTTTCC
AACGGCACCG ACCATATCGA TGTCGATGCC GCGGCCCGCA AGGGCATTAC CGTGACCAAT
ACGCCGAATG TGCTGAGCGA AGATACCGCC GACATGACCA TGGCGCTGAT TCTCGCCGGT
CCGCGGCGCC TGGCGGAAGG CTCACGCATT CTGACCGACC AGCCCGGCGA ATGGGCCGGA
TGGTCGCCAA CCTGGATGCT GGGACGGCGG ATCTGGGGCA AGCGAATCGG CATTGTCGGC
ATGGGCCGGA TCGGCACCGC GGTCGCCAGG CGGGCCAAGG CGTTCGGACT TGCTATCCAC
TATCACAACC GCAAACGGGT CAGCCCGCAG ACGGAAGATG AGCTGGAGGC AACCTATTGG
GACAGTCTGG ACCAGATGCT GGCCCGGGTT GATATTGTCT CGGTCAATTG TCCATCCACA
CCGGCCACCT ACCATCTGCT TTCGGCGCGG CGTTTGGCGT TGATGCAGCC GACCAGCTAT
ATCGTCAATA CCGCCCGGGG CGGCATTATC GACGAGAGTG CCCTCATTCA ATGCATCCGT
GACGGCAAGA TCGCGGGCGC AGGTCTGGAT GTGTTCGAGA ATGAACCGGC AGTCAATCCG
AAGCTGTTGA AGCTGGCGGA AGACGGCAAG GTCGTCTTGC TGCCGCATAT GGGATCAGCA
ACCATTGAGG GCCGGATCGA TATGGGGGAC AAGGTGATCA TCAATATCCG CACCTATTTC
GATGGCCACA GGCCACCGAA CCGGGTTTTG CCGGGGCGCG ACTGA
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| Protein sequence | MTQRKKTKVY ITRKLPDAVE TRMRELFEAE LNIDDTPRSR DALMDAVKTC DVLVPTVTDR
IDAGLIEAAG PQLKLIASFS NGTDHIDVDA AARKGITVTN TPNVLSEDTA DMTMALILAG
PRRLAEGSRI LTDQPGEWAG WSPTWMLGRR IWGKRIGIVG MGRIGTAVAR RAKAFGLAIH
YHNRKRVSPQ TEDELEATYW DSLDQMLARV DIVSVNCPST PATYHLLSAR RLALMQPTSY
IVNTARGGII DESALIQCIR DGKIAGAGLD VFENEPAVNP KLLKLAEDGK VVLLPHMGSA
TIEGRIDMGD KVIINIRTYF DGHRPPNRVL PGRD
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