Gene Avi_0311 details

Gene Information

• Locus tag: Avi_0311
• Symbol: recF
• ID: 7387766
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 266366
• End bp: 267490
• Gene Length: 1125 bp
• Protein Length: 374 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643649992
• Product: recombination protein F
• Protein accession: YP_002548207
• Protein GI: 222147250
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1195] Recombinational DNA repair ATPase (RecF pathway)
• TIGRFAM ID: [TIGR00611] recF protein

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.406883
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGAAA AAACCTTCAT CAACCGGCTG CAGCTGACAG ATTTCCGCAA TTACGGCTCC 
GCCTCCTTGC GGCTCGATGG CCGCCATGTG GTGCTGACCG GCAATAATGG TTCCGGCAAG 
ACCAATTTGA TGGAAGCGGT TTCCTTTCTG TCGCCGGGGC GCGGGCTGCG CCGTGCGGTG 
CTGTCCGATG TGGCGCGGGC CGGTGCGGCA AGCGGATTTT CGATTTTTGC CAGCCTGGAG 
GGCATGGCCG GAGACGTGGA GCTTGGCACC GGTTCGGAGG TTCTGGACGA GACGGCGGTG 
CGGCGTCTGC GCATCAATGG CGCCTCGGTG CGCTCCGTCG ATGAATTGAC CGATCATCTG 
CGCGTTCTCT GGCTGACGCC CGCCATGGAC GGTCTCTTCA CCGGCTCCTC TTCCGAGCGG 
CGCCGGTTTC TGGATCGGCT GGTCCTGTCG ATCGATCCAC AGCATGGCCG TCGCGCCAGC 
GACTTCGAGC GCGCCATGCG CAGCCGCAAC AAGCTGCTCT CTGAAGGTCG TTTCGATGCC 
AGTTGGCTTG CCGGGATAGA GCAGCAGATG GCGGCGCTCG GCATTGCCAT GGCGCTCGCC 
CGTCAGGAAA TGATGCGGTT GCTGGCCGCT CTTATCGAGC AGCGACGGGA GCCTGAAACT 
TTTCCGGGGG CAGACCTGAT GCTGTCGGGC TTCATGGATG AGCATGCTGG CACGGCGGCT 
ATCGATCTCG AAGACACCTA TCGCGACAGT CTGGCAGGCT CCAGGGGCAG GGATGCGGCG 
GCGGGCCGCA CGCTGGAGGG GCCGCATCGC AGCGATCTTC TGGTCCGTCA CCGGGAAAAG 
GACATGGAAG CCGAGCGCTG TTCGACCGGC GAGCAGAAGG CTCTGCTGAT CGGCCTGATC 
CTTGCCCATG CCGAACTGGT GGCGACGATG ACCGGTTTTG CGCCGATCCT GCTTTTGGAT 
GAAATTGCCG CCCATCTCGA CGAGGGCCGT CGCGCTGCCC TGTTCGACCG GATCGACGTG 
CTCGGCGGCC AGGCTTTCAT GACCGGTACC GATGCGCAGA TGTTTGCAAG TCTGGGCGAT 
CGGGCACAAT TCGTCACTGT GGATGACGGC CATCTGTCAT TGTGA 

 

Protein sequence

MAEKTFINRL QLTDFRNYGS ASLRLDGRHV VLTGNNGSGK TNLMEAVSFL SPGRGLRRAV 
LSDVARAGAA SGFSIFASLE GMAGDVELGT GSEVLDETAV RRLRINGASV RSVDELTDHL 
RVLWLTPAMD GLFTGSSSER RRFLDRLVLS IDPQHGRRAS DFERAMRSRN KLLSEGRFDA 
SWLAGIEQQM AALGIAMALA RQEMMRLLAA LIEQRREPET FPGADLMLSG FMDEHAGTAA 
IDLEDTYRDS LAGSRGRDAA AGRTLEGPHR SDLLVRHREK DMEAERCSTG EQKALLIGLI 
LAHAELVATM TGFAPILLLD EIAAHLDEGR RAALFDRIDV LGGQAFMTGT DAQMFASLGD 
RAQFVTVDDG HLSL