| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0308 |
|---|
| Symbol | dnaJ |
|---|
| ID | 7387764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 264795 |
|---|
| End bp | 265937 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649990 |
|---|
| Product | chaperone protein DnaJ |
|---|
| Protein accession | YP_002548205 |
|---|
| Protein GI | 222147248 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
|---|
| TIGRFAM ID | [TIGR02349] chaperone protein DnaJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.266197 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG CAGATTTCTA CGAGACCCTC GGTGTCTCCA AAACCGCAGA TGAAAAAGAG
CTGAAAAGCG CCTTCCGCAA GCTGGCGATG AAGTTTCACC CGGACAAAAA TCCTGGTGAT
GCCGAATCCG AGCGGAAGTT CAAGGAAATA AACGAGGCCT ATGAAACGCT GAAGGACCCG
CAAAAACGGG CTGCCTATGA TCGTTTCGGC CACGCTGCCT TTGAGCAGGG TGGCATGGGC
AGCGCTGGCG GCGGCGGTGG TTTTGCTGGC GGCGGCTTCT CGGATATTTT CGAGGACATC
TTTGGCGAGA TGATGGGCGG CGGGCGTGGC GGCAATGCGC GTGGACGCTC CACCGGTGGC
CGTGAACGTG GTGCCGACCT GCGCTACAAT ATGGAAATTT CGCTGGAGGA AGCCTTTACC
GGCAAGACGG CGCAGATCCG GGTTCCGACT TCGATTACCT GCGAAGTCTG TTCCGGTTCG
GGCGCCAAGC CCGGCACCAA GCCGACCACC TGCGCCACCT GCCAGGGGTC TGGACGGGTG
CGGGCTGCCC AGGGCTTCTT TTCCATTGAG CGGACCTGCC CGACCTGTCA GGGCCGGGGC
CAGACGATCA GCGATCCCTG CGGCAAATGC CATGGCCAGG GCCGCGTCAC GGAAGAGCGT
CAGCTGTCCG TTTCCATTCC GTCCGGCATC GAAGATGGGA CACGCATTCG TCTTCAGGGC
GAGGGCGAAG CGGGCTTGCG AGGCGGGCCG TCAGGCGATC TCTATATTTT CCTGTCGGTC
AAGCCGCACC AGTTCTTCCA GCGCGAAGGT GCCGATCTCT ACTGCTCCGT GCCGATCTCG
ATGACAACCG CTGCACTCGG CGGCACGTTC GACGTGACCA CGCTGGATGG AACCAAGTCG
CGGGTCACCG TGCCGGAAGG TACGCAACCC GGCAAGCAGT TCCGTTTGAA GGGCAAGGGC
ATGCCGGTGC TGCGCTCGGC GCAGATGGGT GATCTCTACA TCCAGATCCA GATCGAGACG
CCGCAGAAGC TCACCAAGCG CCAACGCGAG TTGCTGCAGG AATTCGACCA GATCTCGTCC
AAGGAGAACA ATCCAGAATC GACTGGATTT TTCGCCCGGA TGAAAGAGTT CTTCGAGGGT
TGA
|
|---|
| Protein sequence | MAKADFYETL GVSKTADEKE LKSAFRKLAM KFHPDKNPGD AESERKFKEI NEAYETLKDP
QKRAAYDRFG HAAFEQGGMG SAGGGGGFAG GGFSDIFEDI FGEMMGGGRG GNARGRSTGG
RERGADLRYN MEISLEEAFT GKTAQIRVPT SITCEVCSGS GAKPGTKPTT CATCQGSGRV
RAAQGFFSIE RTCPTCQGRG QTISDPCGKC HGQGRVTEER QLSVSIPSGI EDGTRIRLQG
EGEAGLRGGP SGDLYIFLSV KPHQFFQREG ADLYCSVPIS MTTAALGGTF DVTTLDGTKS
RVTVPEGTQP GKQFRLKGKG MPVLRSAQMG DLYIQIQIET PQKLTKRQRE LLQEFDQISS
KENNPESTGF FARMKEFFEG
|
|---|
| |