Gene Avi_0306 details

Gene Information

• Locus tag: Avi_0306
• Symbol: dnaK
• ID: 7387762
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 262413
• End bp: 264329
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643649988
• Product: molecular chaperone DnaK
• Protein accession: YP_002548203
• Protein GI: 222147246
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR02350] chaperone protein DnaK

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAAG TAATCGGTAT CGACCTTGGA ACGACCAATT CCTGCGTTTC TGTCATGGAC 
GGCAAGGATG CGAAGGTCAT TGAAAATTCA GAGGGCGCGC GTACCACGCC GTCCATGGTG 
GCTTTTTCGG ACGATGGTGA GCGCCTTGTC GGCCAGCCGG CTAAGCGCCA GGCGGTGACA 
AACCCCACCA ACACGCTCTT CGCTGTCAAG CGCCTGATTG GCCGCCGCTA CGAAGATCCG 
ACCGTTGAAA AGGACAAGGG CCTCGTGCCT TTCCCGATCA TCAAGGGCGA CAATGGTGAT 
GCTTGGGTCG AAGCTCAGGG CAAAGGCTAT TCGCCAGCCC AGATCTCTGC GATGATCCTG 
CAGAAGATGA AGGAAACCGC AGAAGCCTAT CTCGGCGAAA AGGTCGAAAA GGCCGTTATC 
ACCGTTCCCG CTTACTTCAA TGACGCTCAG CGTCAGGCAA CCAAGGATGC AGGCCGCATC 
GCTGGTCTTG AAGTGCTGCG CATCATCAAC GAGCCAACGG CTGCTGCTTT GGCCTATGGC 
CTCGACAAGA CCGAAGGCAA GACCATTGCC GTTTACGACT TGGGCGGTGG TACATTCGAT 
ATTTCCGTTC TGGAAATCGG CGATGGCGTG TTTGAAGTGA AGTCCACCAA CGGTGACACC 
TTCCTCGGTG GTGAAGACTT CGACATGCGT CTGGTCGAAT ATTTGGCTGC TGAGTTCAAG 
AAGGAACAGG GCATTGAGCT GAAGAACGAC AAGCTCGCTC TGCAGCGCCT GAAGGAGGCT 
GCTGAAAAGG CCAAGATCGA ACTGTCCTCG TCGCAGCAGA CCGAAATCAA CCTGCCGTTC 
ATCACGGCTG ACGCTTCTGG TCCAAAGCAT TTGACCATGA AGCTGACCCG CGCCAAGTTT 
GAAAACCTGG TGGACGATCT GGTTCAGCGC ACTGTTGCAC CGTGCAAGGC AGCCCTCAAG 
GACGCTGGCG TCACCGCCGC TGACATTGAT GAAGTTGTTC TGGTTGGCGG CATGAGCCGC 
ATGCCAAAGG TGCAGGAAGT TGTGAAGCAG CTGTTCGGCA AGGAACCACA CAAGGGTGTG 
AACCCGGACG AAGTGGTTGC CATGGGTGCT GCCATTCAGG CTGGCGTTCT GCAGGGCGAC 
GTTAAGGACG TTCTGCTGCT CGACGTCACC CCGCTGTCGC TCGGCATTGA AACCCTCGGC 
GGTGTCTTCA CTCGTCTGAT CGACCGTAAC ACGACGATTC CGACCAAGAA GAGCCAGGTG 
TTCTCGACCG CTGACGACAA CCAGCAGGCT GTGACCATCC GCGTGTCGCA GGGCGAGCGC 
GAAATGGCGC AGGACAACAA GCTGCTCGGC CAGTTCGACC TGGTTGGTCT GCCACCATCA 
CCCCGCGGCG TTCCGCAGAT CGAAGTGACC TTCGATATCG ACGCCAACGG TATTGTGCAG 
GTTTCGGCCA AGGACAAGGG CACTGGCAAG GAACAGCAGA TCCGCATTCA GGCCTCCGGT 
GGTCTGTCGG ATGCTGATAT TGAGAAGATG GTCAAGGACG CTGAAGCCAA TGCTGAGGCC 
GACAAGAACC GTCGCGCTGT GGTCGAAGCC AAGAACCAGG CTGAAAGCTT GATCCATTCC 
ACCGAGAAGT CGGTGAAGGA TTATGGCGAC AAGGTCTCCG CAGACGACCG GAAGGCGATC 
GAGGATGCTA TTGCTGCCCT GAAGTCTTCG ATTGAAACCT CGGAACCGAA TGCCGAGGAC 
ATTCAGGCCA AGACCCAGAC CTTGATGGAA GTGTCCATGA AGCTTGGTCA GGCGATTTAC 
GAGTCCCAGC AGGCTGAAGG CGGTGCCGAG GGTGGGCCAA GTGGTCACCA TGATGACGGC 
ATCGTCGATG CCGACTATGA AGAAGTGAAG GACGACAACA CGAAGAAGTC TGCTTGA 

 

Protein sequence

MAKVIGIDLG TTNSCVSVMD GKDAKVIENS EGARTTPSMV AFSDDGERLV GQPAKRQAVT 
NPTNTLFAVK RLIGRRYEDP TVEKDKGLVP FPIIKGDNGD AWVEAQGKGY SPAQISAMIL 
QKMKETAEAY LGEKVEKAVI TVPAYFNDAQ RQATKDAGRI AGLEVLRIIN EPTAAALAYG 
LDKTEGKTIA VYDLGGGTFD ISVLEIGDGV FEVKSTNGDT FLGGEDFDMR LVEYLAAEFK 
KEQGIELKND KLALQRLKEA AEKAKIELSS SQQTEINLPF ITADASGPKH LTMKLTRAKF 
ENLVDDLVQR TVAPCKAALK DAGVTAADID EVVLVGGMSR MPKVQEVVKQ LFGKEPHKGV 
NPDEVVAMGA AIQAGVLQGD VKDVLLLDVT PLSLGIETLG GVFTRLIDRN TTIPTKKSQV 
FSTADDNQQA VTIRVSQGER EMAQDNKLLG QFDLVGLPPS PRGVPQIEVT FDIDANGIVQ 
VSAKDKGTGK EQQIRIQASG GLSDADIEKM VKDAEANAEA DKNRRAVVEA KNQAESLIHS 
TEKSVKDYGD KVSADDRKAI EDAIAALKSS IETSEPNAED IQAKTQTLME VSMKLGQAIY 
ESQQAEGGAE GGPSGHHDDG IVDADYEEVK DDNTKKSA