Gene Avi_0305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0305 
SymbolpbpC 
ID7387761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp259590 
End bp262091 
Gene Length2502 bp 
Protein Length833 aa 
Translation table11 
GC content60% 
IMG OID643649987 
Productpenicillin-binding protein 
Protein accessionYP_002548202 
Protein GI222147245 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGGCA TGAAAAAGTC ACGAAACCGC ATTGAGCCCA GGCTTGGCGA CGCTGAGAAT 
GAGGATGGTG ACGAGATCAG GCTCGACAGC AATGATCGCG TGCTCGGCGG ACGCTCGGCC
TCGGGTGGGA AAAAAATGCC GGCCACCAGT TCCAAACGGT CGAGAGAGGT TGCCGATCCG
CGCCCGAAAC GTGAGAAAGT CCAGTCCGGT GGCCTTTTTG GGGGTATCCG CAGGCTGTTC
TACTGGTGCG TTGTGCTGGG CATATGGGGA ACGATCGGCG TCGTTGGCCT GGTCATCTAT
TTTGCCGCCC AGATGCCAAG CGCCAGTTCC TGGACCGTGC CGGCCCGCGC GCCGAATATC
AAGATTGTCT CTGTCGATGG CGCATTGATC GCCAATCGCG GTGTCACCGG TGGCGAAGCC
TTGTCCATCG ATGAAATGTC GCCCTATCTG CCGGAAGCGA TCGTGGCGAT TGAGGACAAA
CGGTTTTACC ACCATTTCGG TGTCGATTTC ATCGGGGTCG GCCGCGCCTT CGTCACCAAT
ATTCTGCTGG GCCATAAGGC TCAGGGCGGA TCGACCATCA CCCAGCAATT GGCCCGAAAC
CTGTTTCTGT CGCCCAAGAA GACGTTTGAG CGCAAAGTGC AGGAGGTGCT GCTATCGCTG
TGGCTTGAGC AGAAATATAC CAAGGATCAG ATCCTGGCCA TGTATCTGAA CCGGGTCTAT
TTTGGCGACA ATGCCTATGG CGTCGAAGCG GCATCGCGGC GCTATTTCAA TACCTCTGCG
CGTGACGTCA ATCTGGGCGA AGCGGCGCTT TTGGCCGGGT TGGTTCAGGC GCCGTCGCGG
CTGTCGCCGG TCAACGATCC AAAGCCAGCC CAGGATCGGG CCAAGGTCGT GCTGGGCGCC
ATGCGCGAAC AGGGCTACAT CACGGACAGC GACTTCGACC GCGCCATGAA ACAGTCCCCG
GACCACGCCA AGCGGCAGGC CGATGGTGCA GGCCAATATG TGGCCGACAT GGTGGCGGGC
CAGTTGAAAG GGCTGATCGG CGAGGTCAAA CAGGACATTG TCGTCACCAC GACGATCGAT
CCGACGCTGG AGGATGCGGC GCAGGCCGCA ATTGCTGCCA CGCTGGACAA GGACGGCAAG
AAATCCAATG CCTCGCAAGC GGCTCTTGTC GCCATTGATG GCAATGGCGC GGTGCGTGCT
TTGGTCGGCG GTCGGGATTA TGCGACCAGT CAGTTCAATC GAGCCGTAAC CGCCAAACGG
CAGCCGGGTT CGGCTTTCAA GCCTTTCGTT TATGCCGCTG CCATGGAAAT CGGCGATACG
CCCAGCACTG TCCGCAATGA CGGTCCGGTG AAGATTGGCA ACTGGACCCC TGAAAACTAC
GAGCAAAAAT ACAATGGACC GGTGACGCTT TCCTACGCGC TCGCCCATTC GCTCAACACT
GTGGCCGCCC AGTTGGTGAT GGAGGTTGGC CCGGATCAGG TGATCAAACT TGCCCACCGG
CTCGGTGTCG AATCGGATCT GCAAAGCAAT GCGTCGATTG CGCTCGGCAC CTCGGAAGTC
TCACTGCTGG AGCTGACGGC AGCCTATGCG CCCTTCATGA ATGGCGGCTA CAAGGCAACC
CCGCATGTGA TCAGCCAGAT TGCCGATGCC GATGGCAAGG TGCTTTATAC AGCCGATTAC
GGCGAGCCCC CGCGAGTGCT CAATCAGCAG GTTGTTGGGC AGATGACCCG GATGATGGAA
TCTGTGATGA CCGAGGGCAC CGGCAAGGCG GCCAAGCTCA AGAACTGGCA AGCAGCTGGC
AAGACCGGAA CGACACAGTC GTTCCGCGAC GCGCTGTTTG TCGGCTTTAC CAGCAATCTC
ACCACCGGCG TCTGGTTCGG CAATGACGAC GGGGCGCCGA TGAAGAAGGT GACCGGCGGC
GGTCTTCCTG CCAAGACCTG GAAGGATTTC ATGACGGTTG CCCATAAAGG TCTGACACCG
GTGCCGTTGT TTGGCGATCC GACGCCACAG ACCGAGGAAA GTCCGTCGCT GACGACGATG
ATCCAGCAGG TCCTGTCCGG CACGCCGTCC ACGCCTGCCC CTGCCGATCA GGAAAACAGC
TATCCACCGG CGCCACCAGC GCCTGCCAAT ACGCCGGGTC CGCTGTCCGG CAATGCGCCC
GGCATTCAGC CTGGTGATGC CAATCCGGCT TATCCACCTC AGGCGCGCCA GATGCCAAAC
CAGAATCCGG GTCAACTGCC GGGCCAGGCC CCATTACAGC CGCGCCCGCC GGTCAATCCA
CGCGATGGCG CCGTTCTGGA AGGCCGGGTT CCGCCGGGGG CTTTGCGCAG CAACAATCCG
ATGCCTGAGG ATGGCTATCC GGGTGAAGAT CCCGACAGTA ATCCTTATGG TGCTGATGGC
GGCTATGCGC CTCCGGCCGA TGTCGGTGAA GGACAACAGC CCCGCGCGCA GAGCCATGGC
GATGGAAAGA CCACGCTGCT GGATGTGATC ATGGGACGGT AA
 
Protein sequence
MAGMKKSRNR IEPRLGDAEN EDGDEIRLDS NDRVLGGRSA SGGKKMPATS SKRSREVADP 
RPKREKVQSG GLFGGIRRLF YWCVVLGIWG TIGVVGLVIY FAAQMPSASS WTVPARAPNI
KIVSVDGALI ANRGVTGGEA LSIDEMSPYL PEAIVAIEDK RFYHHFGVDF IGVGRAFVTN
ILLGHKAQGG STITQQLARN LFLSPKKTFE RKVQEVLLSL WLEQKYTKDQ ILAMYLNRVY
FGDNAYGVEA ASRRYFNTSA RDVNLGEAAL LAGLVQAPSR LSPVNDPKPA QDRAKVVLGA
MREQGYITDS DFDRAMKQSP DHAKRQADGA GQYVADMVAG QLKGLIGEVK QDIVVTTTID
PTLEDAAQAA IAATLDKDGK KSNASQAALV AIDGNGAVRA LVGGRDYATS QFNRAVTAKR
QPGSAFKPFV YAAAMEIGDT PSTVRNDGPV KIGNWTPENY EQKYNGPVTL SYALAHSLNT
VAAQLVMEVG PDQVIKLAHR LGVESDLQSN ASIALGTSEV SLLELTAAYA PFMNGGYKAT
PHVISQIADA DGKVLYTADY GEPPRVLNQQ VVGQMTRMME SVMTEGTGKA AKLKNWQAAG
KTGTTQSFRD ALFVGFTSNL TTGVWFGNDD GAPMKKVTGG GLPAKTWKDF MTVAHKGLTP
VPLFGDPTPQ TEESPSLTTM IQQVLSGTPS TPAPADQENS YPPAPPAPAN TPGPLSGNAP
GIQPGDANPA YPPQARQMPN QNPGQLPGQA PLQPRPPVNP RDGAVLEGRV PPGALRSNNP
MPEDGYPGED PDSNPYGADG GYAPPADVGE GQQPRAQSHG DGKTTLLDVI MGR