| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0305 |
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| Symbol | pbpC |
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| ID | 7387761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 259590 |
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| End bp | 262091 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649987 |
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| Product | penicillin-binding protein |
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| Protein accession | YP_002548202 |
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| Protein GI | 222147245 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGGCA TGAAAAAGTC ACGAAACCGC ATTGAGCCCA GGCTTGGCGA CGCTGAGAAT
GAGGATGGTG ACGAGATCAG GCTCGACAGC AATGATCGCG TGCTCGGCGG ACGCTCGGCC
TCGGGTGGGA AAAAAATGCC GGCCACCAGT TCCAAACGGT CGAGAGAGGT TGCCGATCCG
CGCCCGAAAC GTGAGAAAGT CCAGTCCGGT GGCCTTTTTG GGGGTATCCG CAGGCTGTTC
TACTGGTGCG TTGTGCTGGG CATATGGGGA ACGATCGGCG TCGTTGGCCT GGTCATCTAT
TTTGCCGCCC AGATGCCAAG CGCCAGTTCC TGGACCGTGC CGGCCCGCGC GCCGAATATC
AAGATTGTCT CTGTCGATGG CGCATTGATC GCCAATCGCG GTGTCACCGG TGGCGAAGCC
TTGTCCATCG ATGAAATGTC GCCCTATCTG CCGGAAGCGA TCGTGGCGAT TGAGGACAAA
CGGTTTTACC ACCATTTCGG TGTCGATTTC ATCGGGGTCG GCCGCGCCTT CGTCACCAAT
ATTCTGCTGG GCCATAAGGC TCAGGGCGGA TCGACCATCA CCCAGCAATT GGCCCGAAAC
CTGTTTCTGT CGCCCAAGAA GACGTTTGAG CGCAAAGTGC AGGAGGTGCT GCTATCGCTG
TGGCTTGAGC AGAAATATAC CAAGGATCAG ATCCTGGCCA TGTATCTGAA CCGGGTCTAT
TTTGGCGACA ATGCCTATGG CGTCGAAGCG GCATCGCGGC GCTATTTCAA TACCTCTGCG
CGTGACGTCA ATCTGGGCGA AGCGGCGCTT TTGGCCGGGT TGGTTCAGGC GCCGTCGCGG
CTGTCGCCGG TCAACGATCC AAAGCCAGCC CAGGATCGGG CCAAGGTCGT GCTGGGCGCC
ATGCGCGAAC AGGGCTACAT CACGGACAGC GACTTCGACC GCGCCATGAA ACAGTCCCCG
GACCACGCCA AGCGGCAGGC CGATGGTGCA GGCCAATATG TGGCCGACAT GGTGGCGGGC
CAGTTGAAAG GGCTGATCGG CGAGGTCAAA CAGGACATTG TCGTCACCAC GACGATCGAT
CCGACGCTGG AGGATGCGGC GCAGGCCGCA ATTGCTGCCA CGCTGGACAA GGACGGCAAG
AAATCCAATG CCTCGCAAGC GGCTCTTGTC GCCATTGATG GCAATGGCGC GGTGCGTGCT
TTGGTCGGCG GTCGGGATTA TGCGACCAGT CAGTTCAATC GAGCCGTAAC CGCCAAACGG
CAGCCGGGTT CGGCTTTCAA GCCTTTCGTT TATGCCGCTG CCATGGAAAT CGGCGATACG
CCCAGCACTG TCCGCAATGA CGGTCCGGTG AAGATTGGCA ACTGGACCCC TGAAAACTAC
GAGCAAAAAT ACAATGGACC GGTGACGCTT TCCTACGCGC TCGCCCATTC GCTCAACACT
GTGGCCGCCC AGTTGGTGAT GGAGGTTGGC CCGGATCAGG TGATCAAACT TGCCCACCGG
CTCGGTGTCG AATCGGATCT GCAAAGCAAT GCGTCGATTG CGCTCGGCAC CTCGGAAGTC
TCACTGCTGG AGCTGACGGC AGCCTATGCG CCCTTCATGA ATGGCGGCTA CAAGGCAACC
CCGCATGTGA TCAGCCAGAT TGCCGATGCC GATGGCAAGG TGCTTTATAC AGCCGATTAC
GGCGAGCCCC CGCGAGTGCT CAATCAGCAG GTTGTTGGGC AGATGACCCG GATGATGGAA
TCTGTGATGA CCGAGGGCAC CGGCAAGGCG GCCAAGCTCA AGAACTGGCA AGCAGCTGGC
AAGACCGGAA CGACACAGTC GTTCCGCGAC GCGCTGTTTG TCGGCTTTAC CAGCAATCTC
ACCACCGGCG TCTGGTTCGG CAATGACGAC GGGGCGCCGA TGAAGAAGGT GACCGGCGGC
GGTCTTCCTG CCAAGACCTG GAAGGATTTC ATGACGGTTG CCCATAAAGG TCTGACACCG
GTGCCGTTGT TTGGCGATCC GACGCCACAG ACCGAGGAAA GTCCGTCGCT GACGACGATG
ATCCAGCAGG TCCTGTCCGG CACGCCGTCC ACGCCTGCCC CTGCCGATCA GGAAAACAGC
TATCCACCGG CGCCACCAGC GCCTGCCAAT ACGCCGGGTC CGCTGTCCGG CAATGCGCCC
GGCATTCAGC CTGGTGATGC CAATCCGGCT TATCCACCTC AGGCGCGCCA GATGCCAAAC
CAGAATCCGG GTCAACTGCC GGGCCAGGCC CCATTACAGC CGCGCCCGCC GGTCAATCCA
CGCGATGGCG CCGTTCTGGA AGGCCGGGTT CCGCCGGGGG CTTTGCGCAG CAACAATCCG
ATGCCTGAGG ATGGCTATCC GGGTGAAGAT CCCGACAGTA ATCCTTATGG TGCTGATGGC
GGCTATGCGC CTCCGGCCGA TGTCGGTGAA GGACAACAGC CCCGCGCGCA GAGCCATGGC
GATGGAAAGA CCACGCTGCT GGATGTGATC ATGGGACGGT AA
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| Protein sequence | MAGMKKSRNR IEPRLGDAEN EDGDEIRLDS NDRVLGGRSA SGGKKMPATS SKRSREVADP
RPKREKVQSG GLFGGIRRLF YWCVVLGIWG TIGVVGLVIY FAAQMPSASS WTVPARAPNI
KIVSVDGALI ANRGVTGGEA LSIDEMSPYL PEAIVAIEDK RFYHHFGVDF IGVGRAFVTN
ILLGHKAQGG STITQQLARN LFLSPKKTFE RKVQEVLLSL WLEQKYTKDQ ILAMYLNRVY
FGDNAYGVEA ASRRYFNTSA RDVNLGEAAL LAGLVQAPSR LSPVNDPKPA QDRAKVVLGA
MREQGYITDS DFDRAMKQSP DHAKRQADGA GQYVADMVAG QLKGLIGEVK QDIVVTTTID
PTLEDAAQAA IAATLDKDGK KSNASQAALV AIDGNGAVRA LVGGRDYATS QFNRAVTAKR
QPGSAFKPFV YAAAMEIGDT PSTVRNDGPV KIGNWTPENY EQKYNGPVTL SYALAHSLNT
VAAQLVMEVG PDQVIKLAHR LGVESDLQSN ASIALGTSEV SLLELTAAYA PFMNGGYKAT
PHVISQIADA DGKVLYTADY GEPPRVLNQQ VVGQMTRMME SVMTEGTGKA AKLKNWQAAG
KTGTTQSFRD ALFVGFTSNL TTGVWFGNDD GAPMKKVTGG GLPAKTWKDF MTVAHKGLTP
VPLFGDPTPQ TEESPSLTTM IQQVLSGTPS TPAPADQENS YPPAPPAPAN TPGPLSGNAP
GIQPGDANPA YPPQARQMPN QNPGQLPGQA PLQPRPPVNP RDGAVLEGRV PPGALRSNNP
MPEDGYPGED PDSNPYGADG GYAPPADVGE GQQPRAQSHG DGKTTLLDVI MGR
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