| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0301 |
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| Symbol | dapE |
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| ID | 7387758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 256616 |
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| End bp | 258004 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649984 |
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| Product | hypothetical protein |
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| Protein accession | YP_002548199 |
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| Protein GI | 222147242 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATC TAGCCCCCAT TCTCGCCGAG GCCGACAAGG CGCTGCCACA AAGCCTTGAT
CGGCTTTTCG ACCTTGTGCG TATTGCCTCG ATTTCCACCG ACCCGGCCTA TAAGGCCGAT
TGCCGTAAGG CAGCGGAATG GCTGGCGCAG GAGCTGAAGG GTCTAGGCTT CAATGCCTCC
GTGCGCGACA CGCCCGGTCA CCCGATGGTC GTTGGCCATC ACGATGCTGA CCGCCCGGAT
GCGCCACATG TGCTGTTTTA CGGCCATTAC GATGTGCAGC CGGTCGATCC GCTCGATCTC
TGGGAAAACG ATCCGTTCGA GCCTGCCATC AAGGAGATCG AGCCGGGCCG CAAGGTGATC
ACCGGACGCG GCACCTCCGA TGACAAGGGC CAATTGATGA CCTTTGTCGA GGCCTGCCGG
GCCTATAAAG CCGTGCATGG CGGCCTGCCC ATCAAGATCA CCATCCTGTT CGAGGGCGAG
GAAGAATCCG GTTCGCCTTC GCTGAAGCCA TTTCTTGCGG CCAATGAAGA CGAGCTGAAA
TGCGATTTCG CCCTGGTCTG CGACACCGGG ATGTGGGACC GCGAGACTCC GGCGATTGCG
GCAGCCCTGC GCGGCCTGGT TGGCGAGGAA GTGACCGTGA CGGCGGCGGA TCGTGATCTG
CATTCCGGCC TGTTCGGCGG GGCTGCGGCC AATCCGATCC ATATTCTCGC TAAGGTGCTG
GCCGACCTGC ATGACGAGAC GGGCCGGGTC ACCATTGATG GTTTCTACGA GGGTGTCGAG
GAAACACCAG TCAACATCAA GGCCTCCTGG GAAAAGCTGG GCCGCACTGC CGACAAATTT
CTCAATGATG TCGGCCTGTC GATCCCATCA GGCGAAACAG GCCGCAGCGT CCTGGAATTG
ACCTGGGCGC GTCCGACCGC CGAAGTCAAC GGCATTACCG GTGGCTATAC CGGCGAAGGC
TTCAAAACCG TGATCGCCTC CAAGGCGTCA GCGAAAGTGT CTTTCCGTCT GGTCGGTGAG
CAGGACCCGG CGAAAATCCG CGAAAACTTC CGGGCTTTCG TCAAGGCGCG CATTCCCGGC
GACTGCTCGG TTGAATTTCA CGAGCATGGG GCATCGCCAG CCATCCAGCT TCCCTATGAT
TCGCCCTTCC TGACCAAGGC TAAATCCGCT CTTTCGGATG AATGGCCAAA GCCCGCTGAA
GTGATCGGCA TGGGCGGCTC TATCCCGATA GTCGGGGATT TCCAGACCAT GCTCGGCATG
GATTCGCTGC TGGTCGGCTT TGGCCTGGTG GATGACCGCA TCCACTCGCC TAATGAGAAA
TACGAGCTGG AATCTTTCCA CAAGGGTATC CGGTCCTGGA TCCGTATTCT GGACGCGCTG
GCGCACTGA
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| Protein sequence | MTDLAPILAE ADKALPQSLD RLFDLVRIAS ISTDPAYKAD CRKAAEWLAQ ELKGLGFNAS
VRDTPGHPMV VGHHDADRPD APHVLFYGHY DVQPVDPLDL WENDPFEPAI KEIEPGRKVI
TGRGTSDDKG QLMTFVEACR AYKAVHGGLP IKITILFEGE EESGSPSLKP FLAANEDELK
CDFALVCDTG MWDRETPAIA AALRGLVGEE VTVTAADRDL HSGLFGGAAA NPIHILAKVL
ADLHDETGRV TIDGFYEGVE ETPVNIKASW EKLGRTADKF LNDVGLSIPS GETGRSVLEL
TWARPTAEVN GITGGYTGEG FKTVIASKAS AKVSFRLVGE QDPAKIRENF RAFVKARIPG
DCSVEFHEHG ASPAIQLPYD SPFLTKAKSA LSDEWPKPAE VIGMGGSIPI VGDFQTMLGM
DSLLVGFGLV DDRIHSPNEK YELESFHKGI RSWIRILDAL AH
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