| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0262 |
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| Symbol | cdd |
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| ID | 7387566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 228346 |
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| End bp | 228738 |
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| Gene Length | 393 bp |
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| Protein Length | 130 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649956 |
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| Product | cytidine deaminase |
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| Protein accession | YP_002548171 |
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| Protein GI | 222147214 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0295] Cytidine deaminase |
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| TIGRFAM ID | [TIGR01354] cytidine deaminase, homotetrameric |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTCACG ACCTGTTCGA GGCGGCCCGC GATGCCATGC GCCATGCCCA TGCGCCCTAT
TCGAAATTTC CAGTTGGCGC TGCAATCCGC GCCGATGATG GCAAGATCTA TGTTGGCGCC
AATATCGAGA ACCTGTCTTT TCCTCAAGGC TGGTGCGCCG AGCCGACGGC CATCGGCTGC
ATGATCATGG GTGGCGGACG AAAGATCGTC GAGATCGCCG TCATCGCTGA AAAGCTGGCG
CTTTGCCCAC CTTGCGGTGG CTGCCGCCAG AAGATCCGGG AATTTGCTTC GCCTGAGACG
AAAATCTACC TCTGCGATGA GGTGGGCGTG CAAAAGGTGA TGAGCATGGA CGAGTTGCTG
CCCTTCAGCT TCGAGACGGA TACACTCGGA TGA
|
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| Protein sequence | MSHDLFEAAR DAMRHAHAPY SKFPVGAAIR ADDGKIYVGA NIENLSFPQG WCAEPTAIGC
MIMGGGRKIV EIAVIAEKLA LCPPCGGCRQ KIREFASPET KIYLCDEVGV QKVMSMDELL
PFSFETDTLG
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