| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0248 |
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| Symbol | |
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| ID | 7387557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 218676 |
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| End bp | 219638 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649946 |
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| Product | 2-hydroxyacid dehydrogenase |
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| Protein accession | YP_002548162 |
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| Protein GI | 222147205 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCCCA AGCCTCCCGT GGTGATTGAC CTCAAGTTTT CACGCGCCGC CATGCAGGCA
GCGCTGGCCG GGGCCTTTCC GGATCGTGAG GTGATCGATC TCGGTGATCC CGAGAACGCT
GGCAGGGACC TGTCGGCGGC AGCCTATGCG GTTTTGTGGA AGCCGGAGCC ATCGCTGTTT
ACCCGCGCCT CCGGCCTTAA AGTGCTGTTT TCCGGCGGTG CCGGTGTGGA TCACGTCCTG
ACCTTGCCGG GCCTCCCCGA CTTGCCGATT GTCCGCTTCG TTGACCGCAG CCTGACGGAC
CGGATGAGTG AATGGGTCGT GTTGAACTGT CTCTATCACC TGCGCCATAT GGGCCAATAT
CTCAGGCAGC AGCGTGAGAA AGTGTGGAGC GAAATTGATC TCCAGCCGGA AGCCCGCGAT
GTTACCGTCG GTGTCATGGG GCTGGGCGTT CTGGGCGAGG ATGCGGCGCG CAAACTGAAG
GTGATGGGAT TTGACGTGAT CGGCTGGTCG CGGCGCAGAC GCGAGATCGA CGGGATCGAC
ACCTATGACG AGGCCCATAT CGATGAATTT CTGGCCCGCA CCGATATCCT TGTCGGCCTT
CTGCCGCTGA CCCCGGAAAC CCGGGGCCTC TACGATAGCA GCTTGTTTTC ACGGCTGCGG
CAAGGCGGAG CGCTGGGTAA GCCGGTGTTT CTCAATGCCG GTCGCGGTGG AAGTCAGGTG
GAAGTGGACG TCATCGCCGC CTTGCAGAAA GGCGTGCTGG GCGGCGCATC GCTTGATGTG
TTTGAAAAAG AACCGCTGGC GATGGATAGC CCGCTATGGG CCATGGAGAA TGTCGTCCTG
ACCCCTCATG CCGCAGCGGC ATCGGATGTG CGGGCGCTGT TTGCCCATGT GGAGACGCAG
ATTGCCCGGT TTGAGGCGGG TGAGGCACTG GAGCATGTCG TGGACCGGTC TGCGGGCTAC
TGA
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| Protein sequence | MSPKPPVVID LKFSRAAMQA ALAGAFPDRE VIDLGDPENA GRDLSAAAYA VLWKPEPSLF
TRASGLKVLF SGGAGVDHVL TLPGLPDLPI VRFVDRSLTD RMSEWVVLNC LYHLRHMGQY
LRQQREKVWS EIDLQPEARD VTVGVMGLGV LGEDAARKLK VMGFDVIGWS RRRREIDGID
TYDEAHIDEF LARTDILVGL LPLTPETRGL YDSSLFSRLR QGGALGKPVF LNAGRGGSQV
EVDVIAALQK GVLGGASLDV FEKEPLAMDS PLWAMENVVL TPHAAAASDV RALFAHVETQ
IARFEAGEAL EHVVDRSAGY
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