Gene Avi_0233 details

Gene Information

• Locus tag: Avi_0233
• Symbol: rhtB
• ID: 7387546
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 205644
• End bp: 206273
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 643649935
• Product: RhtB family transporter
• Protein accession: YP_002548151
• Protein GI: 222147194
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCCAG ATGTTTTGAC GGTTCTGACG GCGCTTGGTT TGTATGCTGC GGTGGTGATC 
AGTCCCGGTC CTAATTTCGC TTTGATCTCC AAGCTGGCAA TGTCCGGGGC ACGATCAACC 
GCCGTGGGTG CAACATTTGG ATTTGCCATC GCCGCAACAT TTTATGCGGT TCTCACCATG 
GCAGGTTTGG CTTTGGTTCT GGCAAGGGTT GGATGGCTGG CAAGCCTTAT CCAGATCGCT 
GGCGGCTGTT ATCTTGTCTA TCTCGGCCTG ATGGCGTGGC TCTCGAGCAA GCCGGATACG 
ATGAAACAAG GCGTATCATC TGTCGAAAAG GGCAGTGTTT TGCGCGGTTT GCGCATGGGG 
ATGATCGTTA ATCTCTCCAA CCCGAAAGGC ATTGCCTTCT TTATCGGCCT TTATGCCGTT 
GCAGTGCCGC CCGAGACGGG TCTTTTGGCA AAACTGGCAA TTCTTGTGGG TGGCTTCATG 
ATTGAGATCA TCTGGTACAG TTTGGTCACC GCTCTGTTGT CTCGCAGGCA AGCCAAGGCC 
GTTTATGATC GCTTTGGCCA ATGGGTAGAA CGCGCCATTG GAACAGCGCT GGCCGGGTTT 
GGGATACGGC TGATTGCCGA AAAAATCTGA 

 

Protein sequence

MNPDVLTVLT ALGLYAAVVI SPGPNFALIS KLAMSGARST AVGATFGFAI AATFYAVLTM 
AGLALVLARV GWLASLIQIA GGCYLVYLGL MAWLSSKPDT MKQGVSSVEK GSVLRGLRMG 
MIVNLSNPKG IAFFIGLYAV AVPPETGLLA KLAILVGGFM IEIIWYSLVT ALLSRRQAKA 
VYDRFGQWVE RAIGTALAGF GIRLIAEKI