| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0223 |
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| Symbol | ctpA |
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| ID | 7387538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 199370 |
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| End bp | 199555 |
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| Gene Length | 186 bp |
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| Protein Length | 61 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643649927 |
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| Product | component of type 4 pilus pilin subunit protein |
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| Protein accession | YP_002548143 |
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| Protein GI | 222147186 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3847] Flp pilus assembly protein, pilin Flp |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.668081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCCAAGA TTTTCGCACG TTTTATGAAG GATGAATCCG GCGCAACCGC CATCGAATAC
GGCCTGATCG CCGCTCTGAT TTCCGTGGCC CTGGTTGCTG GTGCAACGTC GCTCGGCTCG
AGCTTGAACA ACACGTTCAC CAATCTGACT ACGCAGATGA ATAAGGCGGC TACCGCATCC
AAGTAA
|
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| Protein sequence | MSKIFARFMK DESGATAIEY GLIAALISVA LVAGATSLGS SLNNTFTNLT TQMNKAATAS
K
|
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| |