Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0218 |
Symbol | ctpC |
ID | 7387535 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 197355 |
End bp | 198164 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643649924 |
Product | component of type IV pilus |
Protein accession | YP_002548140 |
Protein GI | 222147183 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3745] Flp pilus assembly protein CpaB |
TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCCCG CCCGCATTCT CATTCTCTTC GTCGCCGTGG CCGCGGCCGG TCTGGCCGGT CTGTTGGCCA TGGGACTGAG CGGGCAAAAG CGCGTGGTGG TGCAGCAATC CGAGCCTGTG GTGACGAAGG AACCGACCAC CAAGGTGCTG ATCGCCGCTG CCAGCCTGCC GGTCGGCGCC CGCCTGACCG ATAAGGCAAT GCGCTGGATG GACTGGCCGA AGACCGATTT GGTCGACGGT TTCGTGACGG AGGAGAACCG TCCCCAGGCC TTGAGCGACC TTGCCGGGCT TGTCGTGCGG CTGCCGATTT TCGAAGGTGA GCCGATCCGG ATCGAAAAGA TCGCCGACGC CTCCAGCCGC ACCCTTTCAG CGCTGCTTCC AGCCGGAAAG CGGGCAATCT CCACGGAAAT TTCCGTGGCA ACCGGTGCTG GCGGTTTCAT CCTGCCCAAT GACCGTGTTG ACGTGATCAT GGTCCGCAAG GGCGATAATG ACAATCACCT GACCGAAACC GTGCTGTCCA ATGTCCGCGT TCTCGCCATC GACCAGCAGA TCGAGGAAAA GAACGACGGC ACCCGTTCGG TCATTGGCAC CACCGCAACA CTGGAACTGA CACCGGAGCA AACCAAGGTG CTGACGGTTG CCCAGCAGAT GGCCGAGCGC CTGTCACTGG CGCTGCGCTC CGTGGCGGAT GCCCAGGAGC AGGACAATAG TTCCGCAAGC TACCTGCTGA GCGGCGATAG CGGCGGTCCA CAGGTGCAGG TCATCAAATC CGGGCAGATC GTCAAGAGCG CGGGAGCTGC AAAACAATGA
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Protein sequence | MKPARILILF VAVAAAGLAG LLAMGLSGQK RVVVQQSEPV VTKEPTTKVL IAAASLPVGA RLTDKAMRWM DWPKTDLVDG FVTEENRPQA LSDLAGLVVR LPIFEGEPIR IEKIADASSR TLSALLPAGK RAISTEISVA TGAGGFILPN DRVDVIMVRK GDNDNHLTET VLSNVRVLAI DQQIEEKNDG TRSVIGTTAT LELTPEQTKV LTVAQQMAER LSLALRSVAD AQEQDNSSAS YLLSGDSGGP QVQVIKSGQI VKSAGAAKQ
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