| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0217 |
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| Symbol | ctpD |
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| ID | 7387534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 195781 |
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| End bp | 197358 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649923 |
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| Product | component of type IV pilus |
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| Protein accession | YP_002548139 |
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| Protein GI | 222147182 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGGAC GATTTTCCAT GCGCCTTTCC TCTGCCCGCC TGTTTCGGAT GATGATCACC
GGCAGCCTTT CGCTTGGCCT GTCGATCAGC GGCCTGCCGG GAGAAAATAT GCTTGTCTGG
CGTGCCGATG CGCTTGCCGC CGGTGCCCAG AGCCTGGTGC GCATCGCCCA AACCGGCCCC
GGTGTGCGGC GTGACCTGAA GCTTGGCCTC AACAAGGCCA TCGTCGTCGA TCTGCCTGAA
GACGCACATG ATATCCTGGT GGCCGACCCT GAACTGGCCG ATGCCGTCAC CCGCACCTCA
CGCCGGATCT ATCTGTTTGG CAAGAAGGTT GGCCAGACCA ATATTTTCAT TTTCGGGGCG
GATGGCCGCG AGATCGTCAG TCTCGATCTG CAAATCGAAC GGGATATCGA GGGTCTTCAA
ACCAACCTGA GCCGGTTCAT TCCAGAGTCC AATATCAAGG TCGAGATCAT CTCTGACAAC
GTCGTGCTGA GCGGCACGGT GCGCACTCCG CAGGATTCGT CGCGCGCGGT CAGCCTCGCC
AAGGCCTTCC TCCAGGGTGG TGAAGCCACC ACCCGCGGAG AAACCGCAAC CAGCAACAGC
AGCGGCGACG GCGCGGTGGC CATCTATGCA GAAGACCGTC AAACCTCGCA GATCGTCAAC
ATGCTGACCA TCGAAGGCGA AGATCAGGTA ACGTTGAAAG TCACCGTTGC CGAGGTCAGC
CGTCAGGTGC TGAAACAGCT TGGTGTCAGC GCCAGCGCCA CGGATGGCAC CAGCGGCATC
AGCTACGCCA ATCCGTCCAA CCTCGGCAAT TCCGTCGACG TCGGCGGCAC CGCCACAATT
TCCAAGACAT TCGGCAGCTT TGGCATCAGC GCCTATGTCA ATGCCATGGA GCAGGCGGGT
GTGATGCGCA CGCTGGCTGA GCCCAGCCTG ACGGCAATTT CCGGCGAACA GGCGAAATTC
TACGTCGGCG GCGAATATCG TCTGGCAGCT GGCCAGGAAA TCAGCACCGA CAGCACCACC
GGGCAGAAAA CCGTCTCTCG CACGACCTCG ACCGTCGATT ACGGCATTCA GCTGAACTTC
CGACCGGTCG TGCTCTCTCC GGGCCGGATC AGTCTGGCGA TCGAAACCAA TGTCTCCGAG
CCGACCTATG AGGGATCGGT GGTAGAGGGC AATTCGGATT CGTCCATCCC CGGCTCGACC
TATTTGTCGA TCCGCAAGCG CGAGGCCTCG ACCACGGTCG AGCTGCCCTC CGGCGGATCG
ATTGTGATTG CCGGTCTGGT CCAGGACAAT GTCCGCCAGG CCATGTCCGG CCTGCCGGGT
ATTTCGAAAA TCCCGATCTT CGGCACACTG TTTCGCAGCA AGGATTTCGT GCGCAACGAA
ACCGAACTGG TGATCATTGC CACGCCCTAT CTTGTCCGGC CTGTCACCCG CAATGCGCTG
GCGCGTCCCG ACGACAATTT CAATCCTGCT GGAGACGGCG CCATGTATTT CCTGAACCGT
GTCAACAAGG TCTACGGCCG CAAGGAAGCC ACGGCGAACG GCGCTTATCA CGGCACTGTC
GGCTATATTT ACAAATGA
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| Protein sequence | MNGRFSMRLS SARLFRMMIT GSLSLGLSIS GLPGENMLVW RADALAAGAQ SLVRIAQTGP
GVRRDLKLGL NKAIVVDLPE DAHDILVADP ELADAVTRTS RRIYLFGKKV GQTNIFIFGA
DGREIVSLDL QIERDIEGLQ TNLSRFIPES NIKVEIISDN VVLSGTVRTP QDSSRAVSLA
KAFLQGGEAT TRGETATSNS SGDGAVAIYA EDRQTSQIVN MLTIEGEDQV TLKVTVAEVS
RQVLKQLGVS ASATDGTSGI SYANPSNLGN SVDVGGTATI SKTFGSFGIS AYVNAMEQAG
VMRTLAEPSL TAISGEQAKF YVGGEYRLAA GQEISTDSTT GQKTVSRTTS TVDYGIQLNF
RPVVLSPGRI SLAIETNVSE PTYEGSVVEG NSDSSIPGST YLSIRKREAS TTVELPSGGS
IVIAGLVQDN VRQAMSGLPG ISKIPIFGTL FRSKDFVRNE TELVIIATPY LVRPVTRNAL
ARPDDNFNPA GDGAMYFLNR VNKVYGRKEA TANGAYHGTV GYIYK
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