| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0212 |
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| Symbol | ctpI |
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| ID | 7387529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 190237 |
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| End bp | 191217 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649918 |
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| Product | component of type IV pilus |
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| Protein accession | YP_002548134 |
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| Protein GI | 222147177 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGCCG ATCTTGCCGC CACACTGACC AACCCGACCC TGCTGATCGC CGTATTGGTG
GCCATTGCGG TTTTTGCCAC CCTTTACACC CTGATTTCAC CGCTGCTGGA GCGGAGCGAC
CTCAACAAGC GGATGAAGGC CGTATCCTCC GAGCGCGAGC TGATCCGCGC CCGCGAGCGG
GCCAGGATGA ACAGCGAGGG CGGGCGCGGC AGCCTGCGCA ATACCGATAA CAGTTCGGCG
CGCAAGATCG TCGAGCGTTT CAACCTGCGC AAGGCGCTGG TGGACGACAA GACCATGGAC
CGGCTGAAAA CCGCTGGTTT GCGCTCCCAA AATGCCCTGA ACATGTTTCT GACGGCCCGT
TTCCTGCTGC CCTTCCTGTT TCTGGCCCTG GCAACCACCT GGATCTTCGC CTTGCACAAC
ATGCAGTCCA GGCCGTTTGC CGTGCGTTTC CTGGCGGCGG TCGTGGCGGG TTATGTCGGC
TTTTATCTGC CCAATATCTA TATTTCCAAC CGCATTACCA AACGGCAGCA TTCGATCCGT
CGGGCCTGGC CGGATGCACT GGACCTGATG TTGATCTGCG TCGAATCCGG CATGTCGATG
GAAGCGGCGA TGCGGCGCGT CGCCGATGAA ATGGCGTCTC AATCTCCGGC ACTGGCCGAG
GAAATGGTGC TGACCACAGC GGAACTGTCT TTCCTCCAGG ACCGCCGCAC GGCCTATGAA
AACCTTGGAA ACCGGACCCA GCTGGAAATC GTCAAGTCTG TCTGCCAGGC TTTGATCCAG
GCGGAACGCT ACGGAACACC GATCGGCCAG GCCTTGCGCG TTCTGGCGCA GGAGGGCCGC
GACGAGCGGA TGAATGCCGC CGAAAAGAAA GCCGCCGCCC TGCCCCCAAA GCTGACCGTG
CCGATGATCC TGTTTTTCCT GCCGGTGCTG GTCGCCGTTA TTCTTGGTCC AGCCGGTATT
CGCGTCTCGG ACCGGTTCTA A
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| Protein sequence | MSADLAATLT NPTLLIAVLV AIAVFATLYT LISPLLERSD LNKRMKAVSS ERELIRARER
ARMNSEGGRG SLRNTDNSSA RKIVERFNLR KALVDDKTMD RLKTAGLRSQ NALNMFLTAR
FLLPFLFLAL ATTWIFALHN MQSRPFAVRF LAAVVAGYVG FYLPNIYISN RITKRQHSIR
RAWPDALDLM LICVESGMSM EAAMRRVADE MASQSPALAE EMVLTTAELS FLQDRRTAYE
NLGNRTQLEI VKSVCQALIQ AERYGTPIGQ ALRVLAQEGR DERMNAAEKK AAALPPKLTV
PMILFFLPVL VAVILGPAGI RVSDRF
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