Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0175 |
Symbol | pnpA |
ID | 7388336 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 162773 |
End bp | 164917 |
Gene Length | 2145 bp |
Protein Length | 714 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649892 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_002548110 |
Protein GI | 222147153 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAATG TTCACAGCGT TGAAATCGAG TGGGCCGGCC GGCCGCTGAA GCTGGAAACC GGCAAGATCG CCCGTCAGGC TGACGGCGCC GTTCTCGCCA GCTACGGCGA GACCGTTGTT CTGGCCACCG TCGTTTCCGC CAAGTCGCCG AAGCCGGGTC AGGATTTCTT CCCGCTCACC GTCAACTATC AGGAAAAGAC CTATGCCGCC GGTAAGATCC CGGGTGGCTA TTTCAAGCGC GAAGGCCGTC CGAGCGAAAA GGAAACCCTG GTTTCCCGCC TGATCGACCG CCCGATCCGC CCACTTTTCC CGGAAGGTTA CAAGAACGAC ACCCAGGTCG TCGTGACCGT TATTCAGCAC GACCTTGAAA ACGATCCGGA CGTTCTGTCG ATGGTTGCCG CTTCGGCTGC CCTGACACTG TCTGGCGTAC CGTTCATGGG CCCGGTCGGC GGTGCGCGCG TTGGCTATAT CAATGGCGAA TACGTTCTCA ACCCGCATCT CGACGAGATG GATGAATCCG TTCTCGACCT CGTGGTTGCC GGTACGCAGG ATGCCGTCCT GATGGTTGAA TCCGAAGCCA AGGAACTGAA CGAAGACGTC ATGCTCGGCG CCGTGATGTT CGGTCACCGT GGCTTCCAGC CGGTCATCGA CGCGATCATC AAGCTCGCCG AAGTGGCTGC CAAGGAGCCG CGCGAATTCG AACCGGAAGA TCATTCCGCT CTCGAAGCCG AAATGCTCTC GATTGCCGAA GCCGAACTGC GCGACGCCTA CAAGATCACC CAGAAGGCTG ATCGTTATAC GGCCGTCGAT GCCGTAAAGG CCAAGGTCAA GGCACACTTC TTTCCAGAGG GTGCAGAGCC TAAATACACC AACGAAGTGA TCGGCGCGGT CTTCAAGCAC CTGCAAGCCA AGATCGTTCG CTGGAACATT CTCGACACCA AGAGCCGTAT CGATGGCCGT GACCTCGAAA CGGTTCGTGC GATTGTCTCC GAAGTCGGCA TCCTGCCGCG TACGCACGGT TCGGCGCTGT TTACCCGTGG CGAAACCCAG GCGATCGTGG TTGCCACGCT CGGCACTGGC GAAGATGAGC AGTATGTTGA CAGCCTGACG GGCATGTACA AGGAACGTTT CCTTCTGCAT TACAACTTCC CTCCTTATTC GGTTGGTGAA ACTGGCCGCA TGGGCTCCCC GGGCCGCCGC GAAATCGGCC ATGGCAAGCT GGCATGGCGC GCCATTCGCC CGATGCTGCC TTCGCCTGAA CAGTTCCCCT ACACGCTGCG CGTCGTCTCC GAGATCACCG AATCGAACGG CTCGTCCTCG ATGGCAACGG TTTGCGGCAC CTCGCTGGCG CTGATGGATG CGGGCGTTCC GCTGGCCAAG CCGGTTGCTG GTATCGCCAT GGGCCTGATC CTGGAAGGCG AGCGTTTTGC TGTTCTCTCC GACATTCTCG GCGATGAAGA TCATCTCGGC GATATGGACT TCAAGGTGGC TGGTACGGAA GCCGGTATCA CCTCGTTGCA GATGGACATC AAGATCGCCG GTATTACCGA AGAGATCATG AAGGTTGCCC TGGCGCAGGC CCAGAACGGC CGCAAGCACA TTCTCGGCGA AATGGCCAAT GCCATCACCG AAGGTCGCTC GCAGCTCGGC GAATTCGCAC CGCGCATCGA AGTCATGACC ATCCCGGTCG ATAAGATCCG TGAAGTCATC GGTTCCGGTG GTAAGGTTAT CCGCGAAATC GTCGAAAAAA CCGGCGCCAA GATCAACATC GAAGACGATG GTACGATCAA GATCGCCTCT GCTTCCGGTA AGGAAATCGA AGCCGCCCGC AAGTGGATTC ACTCGATCGT TGCTGAGCCT GAAATCGGCG TTGTCTATGA AGGCACGGTC GTCAAGACCG CTGACTTCGG CGCTTTCGTC AATTTCTTCG GTTCGCGAGA CGGTCTCGTC CACATCAGCC AGCTGGCTGT AGACCGTGTT GCCAAGACCC AGGATGTGGT CAAGGAAGGC GACAAGGTTT GGGTCAAGCT GATGGGCTTT GACGAGCGCG GCAAGGTTCG CCTGTCCATG AAGGTTGTCG ATCAGGCAAC CGGCAAGGAA ATCGTCGGCG ACAAGAAGGC CGAAGGCGAC GCTGCCGCTG AATAA
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Protein sequence | MFNVHSVEIE WAGRPLKLET GKIARQADGA VLASYGETVV LATVVSAKSP KPGQDFFPLT VNYQEKTYAA GKIPGGYFKR EGRPSEKETL VSRLIDRPIR PLFPEGYKND TQVVVTVIQH DLENDPDVLS MVAASAALTL SGVPFMGPVG GARVGYINGE YVLNPHLDEM DESVLDLVVA GTQDAVLMVE SEAKELNEDV MLGAVMFGHR GFQPVIDAII KLAEVAAKEP REFEPEDHSA LEAEMLSIAE AELRDAYKIT QKADRYTAVD AVKAKVKAHF FPEGAEPKYT NEVIGAVFKH LQAKIVRWNI LDTKSRIDGR DLETVRAIVS EVGILPRTHG SALFTRGETQ AIVVATLGTG EDEQYVDSLT GMYKERFLLH YNFPPYSVGE TGRMGSPGRR EIGHGKLAWR AIRPMLPSPE QFPYTLRVVS EITESNGSSS MATVCGTSLA LMDAGVPLAK PVAGIAMGLI LEGERFAVLS DILGDEDHLG DMDFKVAGTE AGITSLQMDI KIAGITEEIM KVALAQAQNG RKHILGEMAN AITEGRSQLG EFAPRIEVMT IPVDKIREVI GSGGKVIREI VEKTGAKINI EDDGTIKIAS ASGKEIEAAR KWIHSIVAEP EIGVVYEGTV VKTADFGAFV NFFGSRDGLV HISQLAVDRV AKTQDVVKEG DKVWVKLMGF DERGKVRLSM KVVDQATGKE IVGDKKAEGD AAAE
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