| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0171 |
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| Symbol | truB |
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| ID | 7388334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 160946 |
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| End bp | 161875 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649890 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_002548108 |
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| Protein GI | 222147151 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.347774 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAAAC CCAGAAAACC CAAGGGCCGT CCGGTTTCCG GCTGGCTGAT CCTCGACAAG
CCGGTGGATT ACGGCTCGAC CGAGGCCGTC GGCAAGATCA AGTGGCTGTT CAATGCCCAG
AAAGCTGGTC ACGCCGGAAC GCTTGATCCG TTGGCCTCCG GCATGTTGCC GATTGCGCTG
GGCGATGCCA CCAAGACGGT TCCCTACGTC ATGGATGGCC GCAAGATCTA CGAATTTACC
GTCACCTGGG GCGAAGAACG CTCCACCGAC GATCTTGAAG GTGAGGCAAC CCAAACCTCC
GACCAGCGCC CGACCGAAGA ACAGATCCGC GCTTTGCTGC CGGATTATAC CGGTGTGATC
AACCAGATCC CCCCGCAGTT TTCGGCCATC AAGATTGCCG GGGAGCGCGC TTATGATCTG
GCCCGCGAAG GCGAGGTGGT TGATATTCCC TCCCGCGAGG TGGAAATTCA TCGGTTGACC
CTGTTGAGGG CCGACCATGA TTGCGCTGAT TTCGAAGTTG AATGCGGCAA GGGCACCTAT
GTGCGCTCGC TGGCGCGTGA TATGGGCCGG GATCTTGGCT GCTACGGCCA TATTTCGGAG
TTGCGACGCT CCTTCGTCGC GCCGTTTGCC GAAGACATGA TGGTGCCGCT CGAAGATCTG
GTGGAGCTGG AAAAGATCGA GGATCGTGAC GAGCGGCTGG CAGCCCTCGA TGCTTTCCTG
TTCGATACCG GCGAGGCGCT GATGGCGCTG CCGCAGATCC GGATCAGCGA CGATCAGGCC
CATCGGTTGC GGATGGGCAA TCCGATTATC CTGCGGGGCC GGGATGCGCC GGTAGCCGAA
CCGGAAGCAG TGGCACTGGC CGGTGGCAAG CTGGTGGCGA TCGGCGAGAT CGGCGAGGGC
GAGTTTCGCC CGAAGCGGGT TTTCGCCTGA
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| Protein sequence | MSKPRKPKGR PVSGWLILDK PVDYGSTEAV GKIKWLFNAQ KAGHAGTLDP LASGMLPIAL
GDATKTVPYV MDGRKIYEFT VTWGEERSTD DLEGEATQTS DQRPTEEQIR ALLPDYTGVI
NQIPPQFSAI KIAGERAYDL AREGEVVDIP SREVEIHRLT LLRADHDCAD FEVECGKGTY
VRSLARDMGR DLGCYGHISE LRRSFVAPFA EDMMVPLEDL VELEKIEDRD ERLAALDAFL
FDTGEALMAL PQIRISDDQA HRLRMGNPII LRGRDAPVAE PEAVALAGGK LVAIGEIGEG
EFRPKRVFA
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