| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0160 |
|---|
| Symbol | |
|---|
| ID | 7388325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 144368 |
|---|
| End bp | 148540 |
|---|
| Gene Length | 4173 bp |
|---|
| Protein Length | 1390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643649881 |
|---|
| Product | Hemolysin-type calcium-binding protein |
|---|
| Protein accession | YP_002548099 |
|---|
| Protein GI | 222147142 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACTT TAACGGGCGA TTCTGGAAAC AACACTTTAG CAGGAACATC TTCAGACGAT
ACAATTTCAG GTCTGGCCGG CGACGATATA TTAAACGGTG GCGACGGGAA TGATACGCTG
AAAGGTGGGG CAGGCGCCGA CGCTCTCAAC GGTGGATCGG GCTCCGACAC GGCCAGCTAT
GCCGGAAGTG TGGCGGTCAA TGTCAACCTC AAAACCGGCA TAACATCCGG TGGAGACGCC
GTTGGGGATA CGTTCGACAG TATCGAGAAC CTGACAGGAT CGAGCAATGC CGATATATTG
ACGGGCGACG ATGGTGACAA CGTTATCCAT GGCGGCGGCG GCGATGATAC GCTGGACGGA
GGCAAAGGGG CCGATACTCT AATCGGAGGC ACGGAAGCAG ACACGGCAAG CTATGCCAAT
TCCGATGCAG CCGTACAAGT CAATCTCGTC ACGGGCGTCA ACGCCGGGGG CGATGCTGAG
GGCGATATAC TCGACAACAT ACGAAAAATC GCTGGGTCAG ACTTCGACGA CACATTCACT
GGATCAAGCT CCATCACCTT CGCAGGTGGA AAAGGAGATG ACACCTATTA CGTTGGCAGC
ACCAGCGTCA CCATTTCCGA AGCAAAAGGC GCAGGCGACA ACGACACGGT CCAGAGTTCC
GTAAATTACA CTCTTTCGGG CTATGTCGAA ATACTGAAAT ACACAGGAAC CGGCGACTTT
ACTGGCACCG GCAGCGCGCA AGACAACATC ATTGTTGGTG GCTCTGGCAA TGATACCCTC
ATTGGCAAGG CTGGGGCAGA TACTCTCATC GGAGGCGACG GCTCCGACAC GGCAAGCTAT
GCCGGAAGTG TGGCGGTCAA TGTCAACCTC AAAACCGGCA TAACATCCGG TGGAGACGCC
GTTGGGGATA CGTTCGACAG TATCGAGAAC CTGACAGGAT CGAGCAATGC CGATATATTG
ACGGGCGACG ATGGTGACAA CGTTATCCAT GGCGGCGGCG GCGATGATAC GCTGGACGGA
GGCAAAGGGG CCGATACTCT AATCGGAGGC ACGGAAGCAG ACACGGCAAG CTATGCCAAT
TCCGATGCAG CCGTACAAGT CAATCTCGTC ACGGGCGTCA ACGCCGGGGG CGATGCTGAG
GGCGATATAC TCGACAACAT ACGAAAAATC GCTGGGTCAG ACTTCGACGA CACATTCACT
GGATCAAGCT CCATCACCTT CGCAGGTGGA AAAGGAGATG ACACCTATTA CGTTGGCAGC
ACCAGCGTCA CCATTTCCGA AGCAAAAGGC GCAGGCGACA ACGACACGGT CCAGAGTTCC
GTAAATTACA CTCTTTCGGA CTATGTCGAA ATACTGAAAT ACACAGGAAC CGGCGACTTT
ACTGGCACCG GCAGCGCGCA AGACAACATC ATTGTTGGCG GCTCTGGCAA TGATACCCTC
ATTGGCAAGG CTGGGGCAGA TACTCTCATC GGAGGCGACG GCTCCGACAC GGCAAGCTAT
GGTGGAAATG CAGCAGTAAA TGTCAACCTC AAGACCAATG TTGCGACCGG CGGTGAAGCG
GCGGGAGACA AATTCTATAG CATTGAAAAC CTCACTGGCT CCAGCAATGC CGACACTCTC
GCCGGAAATA GCCTTGCCAA CGTCCTCAAT GGGGCGACTG GTTCTGACAC AGCAAGCTAT
GTCTCGTCGG ACGCAGCCGT ACAAATCAAT CTCATCACGG GCGTCTACAC CGGTGGCGAC
GCGGCGGGCG ATACGCTGAT CTCAATCGAA AAAATCGCTG GGTCAGACTT CGACGACACA
TTCACTGGAT CAAGCTCCAT CACCTTCGCA GGTGGAAAAG GAGATGACAC CTATTACGTT
GGCAGCACCA GCGTCACCAT TACTGAAGTA GCAAATGAGG GCAGCGATAC TGTCCGTGCA
TCAATGGATT ACACACTCTC GAACAATTTA GAGAATCTCG TATACACAGG CTCCAATGAT
TTCATCGGTA CCGGTAACGC GCTAAACAAC ACCATCACCG GCGGCTCCGG CAACGACACG
CTGATCGGCA AAGCAGGCGC CGACGTTCTG ATTGGCGGGT CGGGTTCCGA CACAGCAAGC
TATGCTGGAA GTGCGGCGGT CAATGTCAAC CTCAAGACCA ACTTGGCGAC CGGCGGCGAA
GCGGAAGGCG ATACATTCTC CAGCGTCGAG AACCTGACGG GATCGAGCAA TGCCGACACG
CTGACGGGCA ATGACAGCAA CAACCTTCTC AACGGTGGTG GTGGCAATGA CACCTTGGCA
GGCGGCAAAG GAGCCGATAC GCTGAACGGT GGCAACGGCT CCGACACGGC AAACTACGCC
GATTCCTTTG CAGCCATCCA GATCAATCTC GTGACTGGTA CGCATACGGG CGGTGATGCC
GCAGATGACA CACTGAGCAG CATCGAAGGC GTGATCGGTT CTCAATATGA TGATCGGTTC
ACGTCGGCAT CAACAGGAAC GCTTTCAGGC GGGGGTGGCA ATGACACTTA TGTGGTTAGT
CAGATTGCCA CAACGACGGT TCTGGTCGAA GAGGCCAGCG CTGGCACGGA CACGGTTGAA
ACAACCTTGA CCAGCTACAC GCTGAAGACC AATTTCGAAA ACCTCACCCA CACCGACTCG
ACCAATTTTC TCGGTTACGG CAATAGCGCC GACAACGTCA TTGTCAGTCA GGGCGGCGTC
GATAAGCTCT ATGGCTATGC CGGCAACGAT ACGATCCGTG GCGGCAGCGG TGGCGATACC
ATTGACGGTG GCGACGGAAG CGATACCGCA AGCTACAGCG ATTCCATCGC AGCGGTGACC
ATTAATCTTC TCAGTAAAAC TGTCTCCGGC GGTTACGCAA CAGGCGATGT ATTCACCAGC
ATCGAAAACG TTGAAGGATC GGCCTATGCC GATACGCTGA CGGGAGACAC CGGGGCCAAC
GTGCTATCGG GCGGCGCGGG CGATGACATA CTGGTGGGCG GCGCGGGTGC TGACACGCTC
AATGGCGGCG CTGGCCAAGA CAAGATCACC TATGAAGCCT CGTCTGCGGC GGTCAAGGTT
GATCTCAGCA CTGGGACAGC AACAGGTGGC GATGCGCAAG GTGATAAACT CAGCAGCATC
GAACGTGTCA TCGGCTCCAG TTTCAACGAC ACGCTGATTG GAAGCAGCGT AGCGGAAATG
TTAACGGGCG GCGCTGGCGA TGATATTCTG ATCGGCGGCG GTGGCAATGA CGTCCTGAAC
GGTGGAGGGG GCGCCGATGT CCTTGATGGC GGTGCGGGAA ATTACGATAC GCTCAACTAC
TCTGCCGCCA CATCGGCGGT AGCGCTGGAT CTGACGACAG GAACCGGCTC CGGCTACGCG
GCGGGCGATA CATTTACCGG GATCGAGGCC TTCACCGGCA GCATTTACGG TGACACCTAT
ACCGGCAGCA CCTACGCTGC CGAATATAAT GTCGGTGCAG GCAATGACAC TGTGTTGGCG
GGCTCCGGCG CCGAGAAAAT CAATGGTGGC GCGGGGACGG ATACGGCAAG CTATGCGCTT
TCCACAGCAG GCGTGTCCGT CAACCTGGTG ACGAATGTCG GCAGCGGAGG TTACGCCGAG
GGCGACCAGT ATAGCAGCAT TGAGGTCGTT GTCGGGTCAG ACTATAGCGA CACGTTCACC
TCAAGCACCG ACAAGACCCT GCTGGGCGGC CTTGGTGATG ACACCTATGA CATCGGCAGT
TCGGCAAGCG CTATTACGGA AAATGCCGAT GCCGGGACTG ATCTCGTCAA GACCAGCAGT
GCCAGCTATA CGCTGGGCGA CAATCTCGAA AACCTCACCT ATACCGGCAC GGCCAACTTC
ACCGGCTCCG GCAACAGCGC CGACAATGTG TTGACCGGCG GTGCTGGCGA TGACGTGCTG
GATGGCAGCA CCGGCAATGA CGCCCTCTAC GGTGGTGAAG GCAGCGATGT GTTCGTGTTC
AACGCCAGCT ATGGCAATGA TGTCGTTTTC GACTTCCAGG CCTCGTCGGA CACGATCGAT
CTGACCGGCA TGGGATTTGC CACCGTCAGC GACGCCGCCG CCTATGCCAG CGAGATTGAG
GACGGCGTGC TGTTCAACTT CGGCAACGGC GATACGCTGA CGGTGCATGG CCTGAGCTAT
GCAAGCCTGA CATCCAGCGA CACATTGATG TAA
|
|---|
| Protein sequence | MTTLTGDSGN NTLAGTSSDD TISGLAGDDI LNGGDGNDTL KGGAGADALN GGSGSDTASY
AGSVAVNVNL KTGITSGGDA VGDTFDSIEN LTGSSNADIL TGDDGDNVIH GGGGDDTLDG
GKGADTLIGG TEADTASYAN SDAAVQVNLV TGVNAGGDAE GDILDNIRKI AGSDFDDTFT
GSSSITFAGG KGDDTYYVGS TSVTISEAKG AGDNDTVQSS VNYTLSGYVE ILKYTGTGDF
TGTGSAQDNI IVGGSGNDTL IGKAGADTLI GGDGSDTASY AGSVAVNVNL KTGITSGGDA
VGDTFDSIEN LTGSSNADIL TGDDGDNVIH GGGGDDTLDG GKGADTLIGG TEADTASYAN
SDAAVQVNLV TGVNAGGDAE GDILDNIRKI AGSDFDDTFT GSSSITFAGG KGDDTYYVGS
TSVTISEAKG AGDNDTVQSS VNYTLSDYVE ILKYTGTGDF TGTGSAQDNI IVGGSGNDTL
IGKAGADTLI GGDGSDTASY GGNAAVNVNL KTNVATGGEA AGDKFYSIEN LTGSSNADTL
AGNSLANVLN GATGSDTASY VSSDAAVQIN LITGVYTGGD AAGDTLISIE KIAGSDFDDT
FTGSSSITFA GGKGDDTYYV GSTSVTITEV ANEGSDTVRA SMDYTLSNNL ENLVYTGSND
FIGTGNALNN TITGGSGNDT LIGKAGADVL IGGSGSDTAS YAGSAAVNVN LKTNLATGGE
AEGDTFSSVE NLTGSSNADT LTGNDSNNLL NGGGGNDTLA GGKGADTLNG GNGSDTANYA
DSFAAIQINL VTGTHTGGDA ADDTLSSIEG VIGSQYDDRF TSASTGTLSG GGGNDTYVVS
QIATTTVLVE EASAGTDTVE TTLTSYTLKT NFENLTHTDS TNFLGYGNSA DNVIVSQGGV
DKLYGYAGND TIRGGSGGDT IDGGDGSDTA SYSDSIAAVT INLLSKTVSG GYATGDVFTS
IENVEGSAYA DTLTGDTGAN VLSGGAGDDI LVGGAGADTL NGGAGQDKIT YEASSAAVKV
DLSTGTATGG DAQGDKLSSI ERVIGSSFND TLIGSSVAEM LTGGAGDDIL IGGGGNDVLN
GGGGADVLDG GAGNYDTLNY SAATSAVALD LTTGTGSGYA AGDTFTGIEA FTGSIYGDTY
TGSTYAAEYN VGAGNDTVLA GSGAEKINGG AGTDTASYAL STAGVSVNLV TNVGSGGYAE
GDQYSSIEVV VGSDYSDTFT SSTDKTLLGG LGDDTYDIGS SASAITENAD AGTDLVKTSS
ASYTLGDNLE NLTYTGTANF TGSGNSADNV LTGGAGDDVL DGSTGNDALY GGEGSDVFVF
NASYGNDVVF DFQASSDTID LTGMGFATVS DAAAYASEIE DGVLFNFGNG DTLTVHGLSY
ASLTSSDTLM
|
|---|
| |