| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0152 |
|---|
| Symbol | |
|---|
| ID | 7388318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 135057 |
|---|
| End bp | 135947 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649874 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_002548092 |
|---|
| Protein GI | 222147135 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGGA TTCAATTATC CCAACTGGCC GTGCTGGCAA CGGTGGCCGA AACATCCAGC
TTCAGGAAGG CGGCGGAAGA ACTGGGCATC GCGCCTTCCG CTGTCAGCCA TGCAGTCTCG
GCGCTGGAGG CAAGCCTCGG CGTGCGGTTG TTGGCGCGCA CCACCCGTAG TGTCGCTCCG
ACCGAGGAGG GGCGGCAATT GCTGCAAAAG CTGGCACCAG CGCTGGCCGA TATCGGCACT
GCGCTGGAAA CACTGGCGGA AAACAAATCC AATCCCGCCG GACCGCTGCG GATCACCATG
CCCGCGCTGG CCGCCGAAGA CCTGATCGTA CCGCGCCTTG GAGACTTTCT CGGCCTCTAT
CCGGATATCC AACTCGAACT GATCACCAAT GATCAGTTCG AGGATATTGT CGAAAAGGGT
TTCGATGCAG GACTTCGGCT TGGCGAACAT CTGGAAACGG ATATGGTGGC GGTCAAGGCG
AGCGGACCGA TCAGCGGCAC GATTATCGGC GCACCCAGCT ATTTCGAAAG GCATCCCCTG
CCCGTCCACC CACATGACCT GATGGAGCAT CGCTGCATTC GCCGCCGCTT TTCCAGCGGG
CGGATCTATC GCTGGGAATT GGAAAAACAC GGCAAGCAGA TTGCCGTGGA TGTGCCTGAT
GTTCTGACAC TGGCCGACCA GCGACTGATC CGGCTGGCGG CGCTAAAGGG TGTCGGGCTG
GCCTTTGTCT TTGACCAGCG GGTAGACAAA GATATCCGTG AGGGCAGGCT GATCCGGGTG
TTGGAAGACT GGTGCCCGCC CTTTGACGGC TTTTACATCT ATTACCCCAC CCGCCGCCAG
ATGCGACCGG CCCTGCGCGC CTTTGTCGAT TTCTTCCGGC ACCGGAGTTG A
|
|---|
| Protein sequence | MNRIQLSQLA VLATVAETSS FRKAAEELGI APSAVSHAVS ALEASLGVRL LARTTRSVAP
TEEGRQLLQK LAPALADIGT ALETLAENKS NPAGPLRITM PALAAEDLIV PRLGDFLGLY
PDIQLELITN DQFEDIVEKG FDAGLRLGEH LETDMVAVKA SGPISGTIIG APSYFERHPL
PVHPHDLMEH RCIRRRFSSG RIYRWELEKH GKQIAVDVPD VLTLADQRLI RLAALKGVGL
AFVFDQRVDK DIREGRLIRV LEDWCPPFDG FYIYYPTRRQ MRPALRAFVD FFRHRS
|
|---|
| |