Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0143 |
Symbol | xseA |
ID | 7388312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 127450 |
End bp | 129081 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643649868 |
Product | exodeoxyribonuclease VII large subunit |
Protein accession | YP_002548086 |
Protein GI | 222147129 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1570] Exonuclease VII, large subunit |
TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.958847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCTCTT TCTTTGACGA CGACCAGCCC AGCAATCTGA CCGAATTTTC CGTCTCGGAG CTTTCCGGAT CGATCAAGCG CACCATCGAA ACCGCCTTCG ACCAGGTGCG GGTGCGCGGC GAAATTTCCG GCTTTCGAGG CCAGCATTCC TCCGGCCATG CCTATTTTTC GCTTAAGGAC GACAAGGCGC GGATCGACGC GGTGATCTGG AAGGGCTCGT TTTCCAAGCT GAAATACCGG CCCGAAGAGG GCATGGAAGT GATCGCCACG GGCCGCATCA CCACCTTTCC CGGCTCGTCC AAATACCAGA TCGTCATCGA GCAGATGGAA CCGGCTGGCG CTGGAGCCCT GATGGCGCTG ATCGAGGAGC GCAAACGTCG CTTTACGGCG GAGGGCCTGT TCGATCCGGC CACCAAGCAA TTGCTGCCCT TTATGCCAAA GGTCATCGGC GTCGTCACAT CGCCCACCGG CGCTGTGATC CGCGACATTC TTCACCGGAT TTCCGACCGC TTTCCCGTGC ATGTCCTGGT CTGGCCCGTC AAAGTGCAGG GTGAAGGCTC CGGCGACGAA GTTGCCAACG CCATCAACGG CTTCAATGCC TTTCAGCCTG ATGGTGTCAT CCCAAGGCCG GATGTGCTGA TCGTTGCGCG CGGTGGCGGC AGCCTTGAAG ACCTGTGGAG CTTCAACGAC GAAGCAGTGG TGCGCGCCGC CGCCGCCAGC GCCATTCCGC TGATTTCGGC GGTCGGCCAT GAAACGGACT GGACACTGAT CGACTATGCA GCCGATGTCC GGGCACCAAC ACCGACAGGC GCGGCTGAAA TGGCGGTGCC GGTCAAGGCG GATCTGGAAG CGCAACTGGC CGGGCTTGCT GCCCGACTGG CAGGCGCCGT CAACCGCCAG ATGGATCATC GCCGCCAGAA CCTGCGGGCG CTGGCCCGCG CCCTGCCCTC TCTCGATCAA TTGCTGGCGC TGCCGCGCCG CCGTTTCGAT GAAGCCGCCA GCGGTCTTGG CCGTAGCCTG GAACTGAACA CCATGACCAA GCGGCAAAGC TTCGAGCGGG CCGCCGCCAA ATTGTCGCCG GATATGCTGG TGCGCCGCCT GGTGGAACGC CGACAGCGGG TCAGCGAACG CGCCGCCCTT TCTGACCGGA TTATCGAACG GCTGATCGAG CGGCAAAAAG CCAATCTCGG ACGGATCGAT GCAACATTGA CGGCGGTTCC GGCCCGGCTG AAAGCGCAAA CGGGACGCTC GAGAGACCGG CTGGACAGCT TTTCGCGCCG GGCCGACAGC GCTGTTATCA ACGATCTGCG CCGCGCCCGC TCCACGGTCT CGGCCCATGA CCGGATGCTG CAATCGCTGT CCTACAAGAA TGTCCTGATG CGCGGCTATG CCGTAATCCG TGGGCAGGAT GATCGGCCCC TGTCGCGTGC GGCGGGACTT GAGGATGGAC GAGCCATCGC CATCGAATTT GCCGATGGCC GGGTTTCCGC TGTGACCGGA GAGGGTGATA AGGCGTCACC TCCACCGCAA GCCGCTTCCG CAACGACAAC CCCAGCCCCG GGAAGGCCGA ATCCCTTGCC CAAATCGCCG AAAAAGTCGG AGCCACCCGC CGGACAGGGT AGTCTTTTCT AA
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Protein sequence | MASFFDDDQP SNLTEFSVSE LSGSIKRTIE TAFDQVRVRG EISGFRGQHS SGHAYFSLKD DKARIDAVIW KGSFSKLKYR PEEGMEVIAT GRITTFPGSS KYQIVIEQME PAGAGALMAL IEERKRRFTA EGLFDPATKQ LLPFMPKVIG VVTSPTGAVI RDILHRISDR FPVHVLVWPV KVQGEGSGDE VANAINGFNA FQPDGVIPRP DVLIVARGGG SLEDLWSFND EAVVRAAAAS AIPLISAVGH ETDWTLIDYA ADVRAPTPTG AAEMAVPVKA DLEAQLAGLA ARLAGAVNRQ MDHRRQNLRA LARALPSLDQ LLALPRRRFD EAASGLGRSL ELNTMTKRQS FERAAAKLSP DMLVRRLVER RQRVSERAAL SDRIIERLIE RQKANLGRID ATLTAVPARL KAQTGRSRDR LDSFSRRADS AVINDLRRAR STVSAHDRML QSLSYKNVLM RGYAVIRGQD DRPLSRAAGL EDGRAIAIEF ADGRVSAVTG EGDKASPPPQ AASATTTPAP GRPNPLPKSP KKSEPPAGQG SLF
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