| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0143 |
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| Symbol | xseA |
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| ID | 7388312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 127450 |
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| End bp | 129081 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643649868 |
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| Product | exodeoxyribonuclease VII large subunit |
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| Protein accession | YP_002548086 |
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| Protein GI | 222147129 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1570] Exonuclease VII, large subunit |
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| TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.958847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCTCTT TCTTTGACGA CGACCAGCCC AGCAATCTGA CCGAATTTTC CGTCTCGGAG
CTTTCCGGAT CGATCAAGCG CACCATCGAA ACCGCCTTCG ACCAGGTGCG GGTGCGCGGC
GAAATTTCCG GCTTTCGAGG CCAGCATTCC TCCGGCCATG CCTATTTTTC GCTTAAGGAC
GACAAGGCGC GGATCGACGC GGTGATCTGG AAGGGCTCGT TTTCCAAGCT GAAATACCGG
CCCGAAGAGG GCATGGAAGT GATCGCCACG GGCCGCATCA CCACCTTTCC CGGCTCGTCC
AAATACCAGA TCGTCATCGA GCAGATGGAA CCGGCTGGCG CTGGAGCCCT GATGGCGCTG
ATCGAGGAGC GCAAACGTCG CTTTACGGCG GAGGGCCTGT TCGATCCGGC CACCAAGCAA
TTGCTGCCCT TTATGCCAAA GGTCATCGGC GTCGTCACAT CGCCCACCGG CGCTGTGATC
CGCGACATTC TTCACCGGAT TTCCGACCGC TTTCCCGTGC ATGTCCTGGT CTGGCCCGTC
AAAGTGCAGG GTGAAGGCTC CGGCGACGAA GTTGCCAACG CCATCAACGG CTTCAATGCC
TTTCAGCCTG ATGGTGTCAT CCCAAGGCCG GATGTGCTGA TCGTTGCGCG CGGTGGCGGC
AGCCTTGAAG ACCTGTGGAG CTTCAACGAC GAAGCAGTGG TGCGCGCCGC CGCCGCCAGC
GCCATTCCGC TGATTTCGGC GGTCGGCCAT GAAACGGACT GGACACTGAT CGACTATGCA
GCCGATGTCC GGGCACCAAC ACCGACAGGC GCGGCTGAAA TGGCGGTGCC GGTCAAGGCG
GATCTGGAAG CGCAACTGGC CGGGCTTGCT GCCCGACTGG CAGGCGCCGT CAACCGCCAG
ATGGATCATC GCCGCCAGAA CCTGCGGGCG CTGGCCCGCG CCCTGCCCTC TCTCGATCAA
TTGCTGGCGC TGCCGCGCCG CCGTTTCGAT GAAGCCGCCA GCGGTCTTGG CCGTAGCCTG
GAACTGAACA CCATGACCAA GCGGCAAAGC TTCGAGCGGG CCGCCGCCAA ATTGTCGCCG
GATATGCTGG TGCGCCGCCT GGTGGAACGC CGACAGCGGG TCAGCGAACG CGCCGCCCTT
TCTGACCGGA TTATCGAACG GCTGATCGAG CGGCAAAAAG CCAATCTCGG ACGGATCGAT
GCAACATTGA CGGCGGTTCC GGCCCGGCTG AAAGCGCAAA CGGGACGCTC GAGAGACCGG
CTGGACAGCT TTTCGCGCCG GGCCGACAGC GCTGTTATCA ACGATCTGCG CCGCGCCCGC
TCCACGGTCT CGGCCCATGA CCGGATGCTG CAATCGCTGT CCTACAAGAA TGTCCTGATG
CGCGGCTATG CCGTAATCCG TGGGCAGGAT GATCGGCCCC TGTCGCGTGC GGCGGGACTT
GAGGATGGAC GAGCCATCGC CATCGAATTT GCCGATGGCC GGGTTTCCGC TGTGACCGGA
GAGGGTGATA AGGCGTCACC TCCACCGCAA GCCGCTTCCG CAACGACAAC CCCAGCCCCG
GGAAGGCCGA ATCCCTTGCC CAAATCGCCG AAAAAGTCGG AGCCACCCGC CGGACAGGGT
AGTCTTTTCT AA
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| Protein sequence | MASFFDDDQP SNLTEFSVSE LSGSIKRTIE TAFDQVRVRG EISGFRGQHS SGHAYFSLKD
DKARIDAVIW KGSFSKLKYR PEEGMEVIAT GRITTFPGSS KYQIVIEQME PAGAGALMAL
IEERKRRFTA EGLFDPATKQ LLPFMPKVIG VVTSPTGAVI RDILHRISDR FPVHVLVWPV
KVQGEGSGDE VANAINGFNA FQPDGVIPRP DVLIVARGGG SLEDLWSFND EAVVRAAAAS
AIPLISAVGH ETDWTLIDYA ADVRAPTPTG AAEMAVPVKA DLEAQLAGLA ARLAGAVNRQ
MDHRRQNLRA LARALPSLDQ LLALPRRRFD EAASGLGRSL ELNTMTKRQS FERAAAKLSP
DMLVRRLVER RQRVSERAAL SDRIIERLIE RQKANLGRID ATLTAVPARL KAQTGRSRDR
LDSFSRRADS AVINDLRRAR STVSAHDRML QSLSYKNVLM RGYAVIRGQD DRPLSRAAGL
EDGRAIAIEF ADGRVSAVTG EGDKASPPPQ AASATTTPAP GRPNPLPKSP KKSEPPAGQG
SLF
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