| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0107 |
|---|
| Symbol | |
|---|
| ID | 7388286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 101152 |
|---|
| End bp | 103122 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649842 |
|---|
| Product | beta-glucosidase protein |
|---|
| Protein accession | YP_002548060 |
|---|
| Protein GI | 222147103 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0734039 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGT TTAGCTTGGC GTCCTGCGCC ATTCTGATGG CGTCTGTTGC CATCGCTCAA
AACCAGCCTG TCGTCACCGC CCGTTCCGCC GCGATCCTCA CGGTCGATGC AAAGACCTTC
AAGGATCTTA ACCGCAACGG CCGCCTGGAC CCTTATGAGG ATTGGCGACG TTCTCCGGCA
GAACGGGCAA GTGACCTCGT CAGCCAGATG ACCCTCATCG AAAAGGCCGG GTTGATGATG
CATGGGACGG CACCAGCTTT GGCGTCCGGA TCGGAGGCCG GACAGGGACG CGGCAGCGGT
TACGATCTGG AGCGGATCAA GCCCCTGATC AACGACGCCA AGGTTGCCAC CTATATTACC
CGGCTATCTT TGCCGCCCGA ACAGCTGGCC GCAGAAAACA ATAAGCTCCA GGAGATTGCC
GAGGCCAGCC GGCTTGGCAT TCCGCTGACG ATCAGTACCG ATCCGCGCAA CCATTTCCAA
TATGTGCTGG GCGCTTCGGC CCAGAGCGGT GGTTTCTCCA AATGGCCGGA AAGCCTGGGT
TTTGGGGCGC TCGACGACGC GAAACTGACG CGCCAGTTCG GCGATATCGC TCGACAGGAA
TATCTGGCCG TTGGCATCCA GCAGGCCCTG TCACCGCAAA TCGATCTTGC CACGGAACCA
CGCTGGCCAC GCTCGACCGG CACGTTCGGA GAAGATCCGC AGATTTCCAG GCGCATGGCG
GAAGCCTATG TCGCAGGTTT CCAGAACGGC ACCACGGGCC TGAAACCCGG CAGCGTCAGC
GCCGTCGCCA AGCACTGGGT GGGCTATGGC GCAGCACCGC AAGGCTTTGA CGGCCATAAC
TCCTATGGTC GCCACGTGGT TTTTAAGGCC AAGGACTTCG AAAAGCATGT CACCCCCTTC
AAGGGTGCCT TTGCCGCCAA GGTGGCGGGC ATCATGCCGA CCTATTCGAT TGTCGATGGC
GTGAAGCTTG ACGGCAAACC CCTGGAGCCC GTGGCCGCAG GCTATAGCAA GCAATTGCTG
ACCGATCTGC TGCGTAAGCG CTACAAGTTC GATGGCGTCG TGGTCAGCGA CTGGCTGATT
ACCAATGACT GCAAGGATGA ATGCCTGAAT GGCGAAAAGC CCGGCGACAC GCCGATCATC
CGGCCCGATA CGTTTGGCAT GCCCTGGGGG GTGGAGGATC TCAGCCGCGA GGATCGTTTT
GCTAAGGCGG TAAACGCCGG CATCGACCAA TTCGGCGGCG TCGCCAATTC CGATATCCTG
GTGAAAGCCG TGGAAGACAA GAAAGTCAGC GAAATCAGGA TCGATCAGTC TGCCAAGCGG
TTGCTGATCC AGAAATTCGA GCAGGGCCTG TTTGAAAACC CCTATGCCGA CCCGCAAAAG
GCCAAAGCCA TCGTTGGCAA TGCGGATTTT GTCGCCGAGG GCGAAAAGGC CCAAGCCCGC
GCCATGGTTG TTCTGCAAAA CAAGGGGAAA ATTCTTCCCG TCAAGCCTGG AAAGAAGGTC
TATCTTCTCA ATGTCGATGC CGCCACTGCC CAGAAGCGCG GCTATCAGGT GGTGACAAAA
CCAGAAGATG CGGATTTTGC CCTGGTCCGT CTGATGGCAC CGTTTGAGCG CTTGCATCCC
AACTATTTCT TCGGGGCGCG GCATGAGGAA GGCGACCTAT CCTTCAAGCC CGGCAACCCC
GATTACGACG CCGTGACCGC CATTGCCGGA AAGACACCGA TCATTGCCAC GGTGTTTCTG
TCACGCCCGA GTATTCTCAC CAATTTGAAG GATCAGACAA AGGCGTTGAT CGGCAATTTC
GGCGCCAGTG ACGAGGCGCT GTTCAACGTC ATTGAGGGCA AGCAGAAGGC GCGAGGCAAG
CTGCCGTTTG AACTGCCGTC TTCCATGCAG GCTGTCGAGG CACAGGCGCC CAGCACACCG
CATGATTCGA AAAAGCCGCT CTACAAGATC GGCTATTCGC AGACATATTG A
|
|---|
| Protein sequence | MKMFSLASCA ILMASVAIAQ NQPVVTARSA AILTVDAKTF KDLNRNGRLD PYEDWRRSPA
ERASDLVSQM TLIEKAGLMM HGTAPALASG SEAGQGRGSG YDLERIKPLI NDAKVATYIT
RLSLPPEQLA AENNKLQEIA EASRLGIPLT ISTDPRNHFQ YVLGASAQSG GFSKWPESLG
FGALDDAKLT RQFGDIARQE YLAVGIQQAL SPQIDLATEP RWPRSTGTFG EDPQISRRMA
EAYVAGFQNG TTGLKPGSVS AVAKHWVGYG AAPQGFDGHN SYGRHVVFKA KDFEKHVTPF
KGAFAAKVAG IMPTYSIVDG VKLDGKPLEP VAAGYSKQLL TDLLRKRYKF DGVVVSDWLI
TNDCKDECLN GEKPGDTPII RPDTFGMPWG VEDLSREDRF AKAVNAGIDQ FGGVANSDIL
VKAVEDKKVS EIRIDQSAKR LLIQKFEQGL FENPYADPQK AKAIVGNADF VAEGEKAQAR
AMVVLQNKGK ILPVKPGKKV YLLNVDAATA QKRGYQVVTK PEDADFALVR LMAPFERLHP
NYFFGARHEE GDLSFKPGNP DYDAVTAIAG KTPIIATVFL SRPSILTNLK DQTKALIGNF
GASDEALFNV IEGKQKARGK LPFELPSSMQ AVEAQAPSTP HDSKKPLYKI GYSQTY
|
|---|
| |