| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0103 |
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| Symbol | kdsB |
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| ID | 7388284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 99408 |
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| End bp | 100238 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649840 |
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| Product | 3-deoxy-D-manno-octulosonate cytidylyltransferase |
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| Protein accession | YP_002548058 |
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| Protein GI | 222147101 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase |
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| TIGRFAM ID | [TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0796909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACAGTTG CAACCCGATT ATGCTCCGCC GCCCTGAGAC GTTTTGCCAC TTACCCCCAT
TGCTTTCAAA GGCGAATACC GATGTCTGAC CATACACGCT TCAAAACCCT GGTTCTCATC
CCCGCCCGCA TGGCCTCCAC AAGGCTTCCC GGTAAGCCCC TGGCTGACAT TGCCGGCCTG
CCGATGATCG TCCAGGTGGC AAAGCGCGCA GCGGAGGCCA ATGTCGGACG TATCGTCGTG
GCGGTGGATC ATCCTGACGT GTTCGCCACG GTGACGGCAG CCGGTTTTGA AGCCGTGATG
ACCGGCGAGC AGCATCAATC CGGTTCCGAC CGCATCCATG AAGCGCTGCT GAAGGTCGAT
CCGAAAGGCG AGGCCGAAAT CATCATCAAT GTTCAGGGTG ATCTGCCCAC CATTGACCCG
GAGACGATTC GTGCCGCCTT GCGCCCCCTG GAGGACCCGC AGGTCGATAT CGCCACGCTG
ACGGTGGAGA TCGAGGATGA GGCGGAAAAG ACCAATCCCA ACGTGGTGAA GGTTGTCGGC
TCGCCGCTGT CGGACAATCG CCTGCGGGCG CTTTATTTTA CCCGCGCCAC CGCCCCGCAT
GGCAAAGGAC CGCTTTATCA CCACATCGGC CTCTACGCCT ATCGCCGCGC TGCATTGGAA
CGGTTCGTCG CGCTGTCTCC CTCGGTGCTG GAAAAGCGCG AATCGCTGGA ACAGTTGCGG
GCGCTGGAAG CGGGCATGCG TATCGATGTC GAGATTGTCG ATACTGTGCC GCTTGGCGTC
GATACAGCGG CGGATTTGGA AAAAGCCCGC GCCATTCTGG CTGCAAAATA A
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| Protein sequence | MTVATRLCSA ALRRFATYPH CFQRRIPMSD HTRFKTLVLI PARMASTRLP GKPLADIAGL
PMIVQVAKRA AEANVGRIVV AVDHPDVFAT VTAAGFEAVM TGEQHQSGSD RIHEALLKVD
PKGEAEIIIN VQGDLPTIDP ETIRAALRPL EDPQVDIATL TVEIEDEAEK TNPNVVKVVG
SPLSDNRLRA LYFTRATAPH GKGPLYHHIG LYAYRRAALE RFVALSPSVL EKRESLEQLR
ALEAGMRIDV EIVDTVPLGV DTAADLEKAR AILAAK
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