Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0102 |
Symbol | cycM |
ID | 7388283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 98774 |
End bp | 99331 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643649839 |
Product | cytochrome c |
Protein accession | YP_002548057 |
Protein GI | 222147100 |
COG category | [C] Energy production and conversion |
COG ID | [COG3474] Cytochrome c2 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.108181 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATTCCT ACATGAATAT GGGAGCAGGC GCACTGCTTG GTACGATCTT CGTACTGATG TCAGTGTCCA TTGCGTCGGA GGGGATTTTC CACGCGCCGA CCCCCGAAAA GGAAGGCTAT GCCATCGTGG CTGCCGAAGC GCCTGCCGCT GGCGGCGCGG AAGGTGCGGC ACCAGCCGCA GCCGACAAGC CGATTGCGGA ACTGCTGGCA TCGGCAGACG TCAAGGCTGG CGAGGCCATT TTCAAGAAAT GCACAGCCTG TCATAGCGTC GACAAGGGCG GAGCCAACAA GGTTGGACCC AACCTTTGGG GCGTTGTCGA CCGGCCCGTC GCCAGCCATG AAGGCTTTGC CTATTCCGCC GGTATGAAGG ATTTCTCCAA AGGCAGCTCC GAGCACTGGA CCTTTGAAAA CCTCAACCAC TTCCTGACCG CGCCAAAGAA ATTCGTGGCG GGTACGGCGA TGGGCTTTGC CGGTATTCCC AAGGAACAGG ACCGCGCCAA CCTGCTGGTG TATCTTCACA ACCAGTCCGA CAATCCGGTG GCGTTACCGA CCAATTGA
|
Protein sequence | MNSYMNMGAG ALLGTIFVLM SVSIASEGIF HAPTPEKEGY AIVAAEAPAA GGAEGAAPAA ADKPIAELLA SADVKAGEAI FKKCTACHSV DKGGANKVGP NLWGVVDRPV ASHEGFAYSA GMKDFSKGSS EHWTFENLNH FLTAPKKFVA GTAMGFAGIP KEQDRANLLV YLHNQSDNPV ALPTN
|
| |