Gene Avi_0098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0098 
Symbol 
ID7388280 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp95833 
End bp96558 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content56% 
IMG OID643649836 
ProductABC transporter membrane spanning protein (sugar) 
Protein accessionYP_002548054 
Protein GI222147097 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.152339 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTTCA AGAGCAATCA GGAAATCCTC AGTTCCCTGA CGCTCTATCC GCATGAGCCG 
ACGCTGAAGA ATTACATCAC GATTTTCACC GACCGGTCCT GGTATTCGGG TTATATCAAC
TCGATCATCT ATGTGGTGCA GAATATGGTA ATTTCGGTCG CCTGCGCGCT TCCGGCTGCC
TATGCCTTCT CGCGCTACCG GTTTCTGGGC GACAAGCACC TGTTCTTTTG GCTGCTGACC
AACCGCATGG CACCACCCGC CGTGTTTGCC CTGCCGTTTT TCCAGCTCTA TTCGGCCTTT
GACATGATCG ACACGCATAT TGCGGTGGCG CTGGCCCATT GCCTGTTCAA CGTGCCGCTG
GCGGTGTGGA TTTTGGAAGG TTTCATGTCC GGTATCCCCA AGGAAATCGA TGAAACGGCT
TATATCGACG GCTATTCATT TCCCCGCTTT TTCGTGAAGA TCTTCATACC GCTGATTGCT
TCCGGCATCG GGGTCGCGGC CTTCTTCTGC TTCATGTTCT CATGGGTGGA GCTGCTGATC
GCCCGCACGC TGACCACTGT CGATGCCAAG CCGATTGCGG CCGTGATGAC CCGCACGGTG
TCAGCATCCG GCGTCGATTG GGGCCTGCTG GCCGCAGCCG GTGTGCTGAC GCTGATTCCC
GGTGCCGTGG TGATCTATTT TGTCCGCAAT TATATCGCCA AGGGCTTTGC CCTGGGCCGC
GTCTGA
 
Protein sequence
MSFKSNQEIL SSLTLYPHEP TLKNYITIFT DRSWYSGYIN SIIYVVQNMV ISVACALPAA 
YAFSRYRFLG DKHLFFWLLT NRMAPPAVFA LPFFQLYSAF DMIDTHIAVA LAHCLFNVPL
AVWILEGFMS GIPKEIDETA YIDGYSFPRF FVKIFIPLIA SGIGVAAFFC FMFSWVELLI
ARTLTTVDAK PIAAVMTRTV SASGVDWGLL AAAGVLTLIP GAVVIYFVRN YIAKGFALGR
V