Gene Avi_0089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0089 
Symbol 
ID7388272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp88139 
End bp88897 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content56% 
IMG OID643649828 
ProductRNA polymerase sigma subunit protein 
Protein accessionYP_002548046 
Protein GI222147089 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGATTGCC GGGAGTGGAA TTTTTTTAGG GCAGTGATCC AGTTTTCGCA AGAAGGCGTA 
GAAAGCCCCA TGACAATAAT CATTTCCCAA GCGGCTCTGG AATGCCACAA TAAGAGAGTG
ACGGCCCCGC GCCTTTTCAG GCGCAGCCGG TTGGGTGGGA GATCCGTGCC TTCTGGCGCA
AACGGGATGA TTATGAAGGC TGAAACCGAA GACATGTCTT CCATGCTCGC AGCCGTTGCT
CGCGAACGGG ATGTGGAAGC ATTCGAAACA TTGTTCCGCC ATTACGGTCC GCGCGTAAAG
GCCTATATGG CTCGCCAGGC GCGTGACCAG CAGGCGGCAG AGGAATTGAT GCAGGAAACC
ATGATGGTGG TCTGGAACAA GGCCGCATTA TTCGATCCGA CCCGGGGCAA TGTCTCCGCC
TGGATCTTTA CCATTGCCAG AAATCTGCGG GTTTCGGCCT ATCGCAAGCA GAACCGGCCG
GAATTCGACC CGAACGACCC GGCCTTCGTG CCTGACGAGG TGATGCCAGC CGACAAGGAT
CTGGAAAACC GCCAGGATGC GGAAAGGCTG CACAAGGCCA TGGGACAATT GCCGCAGGAG
CAGTTGGAAC TGTTGCAACG GTCCTTCTTT CACGAAATTC CGCACAGCGC GCTTGCCAAA
GAATTCAATC TGCCGCTCGG CACGGTGAAG TCGAGAATCC GCATGGCCTT TGCCAAGCTT
CGTGCCACCC TTGAAGACCG CTCAGAGGAG GATCGCTGA
 
Protein sequence
MDCREWNFFR AVIQFSQEGV ESPMTIIISQ AALECHNKRV TAPRLFRRSR LGGRSVPSGA 
NGMIMKAETE DMSSMLAAVA RERDVEAFET LFRHYGPRVK AYMARQARDQ QAAEELMQET
MMVVWNKAAL FDPTRGNVSA WIFTIARNLR VSAYRKQNRP EFDPNDPAFV PDEVMPADKD
LENRQDAERL HKAMGQLPQE QLELLQRSFF HEIPHSALAK EFNLPLGTVK SRIRMAFAKL
RATLEDRSEE DR