Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0089 |
Symbol | |
ID | 7388272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 88139 |
End bp | 88897 |
Gene Length | 759 bp |
Protein Length | 252 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643649828 |
Product | RNA polymerase sigma subunit protein |
Protein accession | YP_002548046 |
Protein GI | 222147089 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGATTGCC GGGAGTGGAA TTTTTTTAGG GCAGTGATCC AGTTTTCGCA AGAAGGCGTA GAAAGCCCCA TGACAATAAT CATTTCCCAA GCGGCTCTGG AATGCCACAA TAAGAGAGTG ACGGCCCCGC GCCTTTTCAG GCGCAGCCGG TTGGGTGGGA GATCCGTGCC TTCTGGCGCA AACGGGATGA TTATGAAGGC TGAAACCGAA GACATGTCTT CCATGCTCGC AGCCGTTGCT CGCGAACGGG ATGTGGAAGC ATTCGAAACA TTGTTCCGCC ATTACGGTCC GCGCGTAAAG GCCTATATGG CTCGCCAGGC GCGTGACCAG CAGGCGGCAG AGGAATTGAT GCAGGAAACC ATGATGGTGG TCTGGAACAA GGCCGCATTA TTCGATCCGA CCCGGGGCAA TGTCTCCGCC TGGATCTTTA CCATTGCCAG AAATCTGCGG GTTTCGGCCT ATCGCAAGCA GAACCGGCCG GAATTCGACC CGAACGACCC GGCCTTCGTG CCTGACGAGG TGATGCCAGC CGACAAGGAT CTGGAAAACC GCCAGGATGC GGAAAGGCTG CACAAGGCCA TGGGACAATT GCCGCAGGAG CAGTTGGAAC TGTTGCAACG GTCCTTCTTT CACGAAATTC CGCACAGCGC GCTTGCCAAA GAATTCAATC TGCCGCTCGG CACGGTGAAG TCGAGAATCC GCATGGCCTT TGCCAAGCTT CGTGCCACCC TTGAAGACCG CTCAGAGGAG GATCGCTGA
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Protein sequence | MDCREWNFFR AVIQFSQEGV ESPMTIIISQ AALECHNKRV TAPRLFRRSR LGGRSVPSGA NGMIMKAETE DMSSMLAAVA RERDVEAFET LFRHYGPRVK AYMARQARDQ QAAEELMQET MMVVWNKAAL FDPTRGNVSA WIFTIARNLR VSAYRKQNRP EFDPNDPAFV PDEVMPADKD LENRQDAERL HKAMGQLPQE QLELLQRSFF HEIPHSALAK EFNLPLGTVK SRIRMAFAKL RATLEDRSEE DR
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