| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0083 |
|---|
| Symbol | csgA |
|---|
| ID | 7388266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 82554 |
|---|
| End bp | 83252 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649822 |
|---|
| Product | C factor |
|---|
| Protein accession | YP_002548040 |
|---|
| Protein GI | 222147083 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCGC TTCGCCCAAG CTATAGCGCT CTGGTCATCG GCGCATCCGG CGGTATCGGC
TCGGCGCTTT GCGAGGTTCT GAGGCAGGAT AGTGCCTGCC AGGATGTGGC GACGCTGTCG
CGCCGTGCGG ACGGCTTTGA TCTGACGGAT GAGGCGAGCA TCGCTGCCTG CGCGGATCGG
CTGGCTGGTC AGCACCAAAG CTTCGATCTG ATCCTTTGTG CAACGGGCGC TTTGACCATT
AACGGCGTTG GGCCAGAAAA AGCCATCAAA GCCGTAACTT CTGAGGCGAT GGCCGCTCAG
TTCGCCCTGA ATGCAATTGG TCCAGCGCTT GTGCTCAAAT ATTTCACCCC GCTTCTGGCG
AAAAACAGCC GGTCGCTGAT GGGTTTCCTG TCGGCTCGGG TCGGTTCGAT TGGCGATAAT
CGTCTTGGCG GCTGGATTTC CTATCGGGCA TCCAAGGCAG CGCTTAACCA GATCGTCCAC
ACTGCCGCCA TCGAGATTGG CCGGACACGT CCGCAAGCGG TAGTGGTCAG CCTGCATCCC
GGCAGTGTCG ATACCGGGCT TTCTGCCAAT TTCGCCGTGG GTCATGAGCG GTTTGCCCCG
GATCACAGCG CGGGCCTGCT GCTATCCGTG CTTGACACGC TCACTCCCGC CCAGACCGGG
GGCTTTTTCG CCTATGACGG TTCGGTGATC GAGTGGTAG
|
|---|
| Protein sequence | MTSLRPSYSA LVIGASGGIG SALCEVLRQD SACQDVATLS RRADGFDLTD EASIAACADR
LAGQHQSFDL ILCATGALTI NGVGPEKAIK AVTSEAMAAQ FALNAIGPAL VLKYFTPLLA
KNSRSLMGFL SARVGSIGDN RLGGWISYRA SKAALNQIVH TAAIEIGRTR PQAVVVSLHP
GSVDTGLSAN FAVGHERFAP DHSAGLLLSV LDTLTPAQTG GFFAYDGSVI EW
|
|---|
| |