Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0067 |
Symbol | hrpB |
ID | 7389057 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 57585 |
End bp | 60047 |
Gene Length | 2463 bp |
Protein Length | 820 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643649801 |
Product | DEAD box-like helicase |
Protein accession | YP_002548025 |
Protein GI | 222147068 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0419076 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCATTCT CTCTTCCTCC TTATCCTGTC AGCGAAATCC TGCCTCCTTT GGCCAAGGCA TTGCGAGAGG GAAACCGTGC TGTGCTTTCC GCCCCTCCAG GAGCGGGCAA GACGACACTT GTTCCACTTT ATCTGCTCGA TCAGCCATGG CGCGGCGATA ACCGCATCAT TCTGCTGGAG CCAAGGCGGC TGGCCGCGCG TGCTGCGGCC TCCCGCATGG CCTCCCTGAT CGGCGAGACT GTGGGTGAAA CGGTGGGCTA CCGAATGCGG CTCGATAACC GCATCTCTGC CAAGACGCGG ATTGAAGTGG TCACGGAGGG CGTATTTGCC CGGATGATTC TTGAGGATCC CGAACTCTCC GGCATCGCCG CCGTGCTGTT TGATGAATTT CACGAGCGGT CACTGGATGC GGATTTTGGT CTCGCGCTGG CGCTGGATTG CCAATCCGCG CTGCGCGATG ATTTGCGGCT GATTGTCATG TCGGCGACGC TGGATGTGCA GCGGATGGCA GGTCTGATGC AGGACCCGCC AGTGCTGGAA AGTGCGGGGC GCAGCTTTCC CATCGATATC CGCCACCGCG ACCGGCCCGG CACTGAGCGG ATTGAAGACA GCGTCACCAG TGCCATTCTC GATGCCCATG CCCATGAAAG CGGGTCGATC CTTGCCTTTC TGCCCGGTCA GGCCGAAATC CGCCGCGTGG CGGAGCGGCT GGAGGGCCGG TTGCCAGCGG CAACTTTGAT TGCACCGCTT TACGGCAATC TTTCACAAGC CGAGCAAGAC CAGGCCATCA AGCCCACCAC TCCCGGCACC CGCAAAGTGG TGCTGGCCAC ATCGATTGCC GAAACCTCGA TCACCATCGA CGGGGTGCGG ATCGTCATCG ACAGCGGGCT GCAACGCCTG CCGGTCTACG AACCCTCGAC GGGTATCACG CGACTGGAAA CCACCCGTGT TTCGCGCGCT TCCGCCGACC AGCGGGCCGG ACGTGCCGGT CGAACCGAGC CGGGTATCGC CATCCGGCTG TGGCATGCCG GTCAAACGGC AGCGATGCCA GCCTTTACCC CGCCGGAAAT TCTCGCCAGT GACCTGTCAG GTCTGGTGAT GGACATGGCC CATTGGGGCG TGACCGATGC CTCTGCCTTA TCCTTTATCG ATCAGCCCCC CGCCGCAGCC TTGAAGGAGG CGCGAAACCT GCTGGTGGCT CTTAGCGCAC TGGATGATCA GGGACACTTG ACGGCCAAAG GCAAGATCAT GCGCGGCCTT GGCCTGCCGC CGAGGCTTGC CGCTATGGTA ATTGCCGCCG CCGAACAGGG ACAGGCTAAA ACAGCCAGCG ACATCGCTGT CCTGCTGACG GAACAAGGAT TGGGCGGAAC GGATATCGAC CTGGAAGAAC GCCTGCGCCG ATTTCGGTCG GACCGCAGCG AGCGGGCCAG TGCAGCGCGC AAGCTGGCAG AGCGGCTGAC GAAAGACCTG CCGAAACGTC AGGCTGCTGC CACCCCGGCG CTGGCCGGAG TGCTGCTTTT GCATGCCTAT CCAGACCGGA TCGCGCTGAA ACGGGGCGCA CCGGGGCGAT ATGTGATGGC GAACGGGCGC GGCGCGGAAC TGGCGCAAAC CGAACGGCTG GCGGCAAGCG ACATGCTTGT CATTGCCGAT CTGACCGGGC GGGCGGCGCA AGGGCGAATC CTGAGCGCAG CGGAAATCCG CCTTTCCGAT ATAGAAGAGA GCCTGCCGGC AGCAATCATT CAGGGCGATG AGAGCTTTTT CGACCCGCCA AGCGGCCAGG TCCGCGCTCG GCGCGTCAAG CGGATCGGTG CGATCATTCT GGAGGAGACA CCGCTAGGGC GGCCCAGTGG CGAAGGTGCC ACCAAAGCGC TGGCTGAAGG GTTGCGGCAA TTGGGTCTCG AACGCCTGGA TTTCAGCAAG AATGCCGAGC AATTGCGCCA GCGCATCGGT TTTCTGCATC GCACGCTCGG AACACCCTGG CCAGACATGA GTGACGAGGC CTTGCTGGAT CGGCTTGAGG ACTGGTTCAT TCCCTTCCAG ACCGGTGTGC GCAGCCTTGC CGATATTTCC ATGGGCGGAA TCATCGATGG GCTGAAGGCG CTGGTGCCTT ACGAGGCGCA GCGTGATCTG GACCAGATGG CGCCGACCCA TTTTACCGCG CCGACCGGCA TGAGCCATCC GATCCAATAT GACGGCGACG AGCCGAAGCT GACGATCCGC GTTCAGGAAT TGTTTGGCCT TAAAAACCAT CCGGCCATTG GCGGCGGACG GTTGCCGCTG CTGCTGGAAC TGACGTCGCC AGCGCATCGG CCAATCCAGA CGACCCGCGA CCTGCCTGGT TTCTGGACGG GATCATGGAG CGACGTGCGC GCCGACATGC GAGGACGCTA TCCCCGCCAT CCCTGGCCCG ACGACCCTGC CGCTGCTGCC CCCACGACAC GGGCCAAACC GCGTGGTACA TAG
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Protein sequence | MAFSLPPYPV SEILPPLAKA LREGNRAVLS APPGAGKTTL VPLYLLDQPW RGDNRIILLE PRRLAARAAA SRMASLIGET VGETVGYRMR LDNRISAKTR IEVVTEGVFA RMILEDPELS GIAAVLFDEF HERSLDADFG LALALDCQSA LRDDLRLIVM SATLDVQRMA GLMQDPPVLE SAGRSFPIDI RHRDRPGTER IEDSVTSAIL DAHAHESGSI LAFLPGQAEI RRVAERLEGR LPAATLIAPL YGNLSQAEQD QAIKPTTPGT RKVVLATSIA ETSITIDGVR IVIDSGLQRL PVYEPSTGIT RLETTRVSRA SADQRAGRAG RTEPGIAIRL WHAGQTAAMP AFTPPEILAS DLSGLVMDMA HWGVTDASAL SFIDQPPAAA LKEARNLLVA LSALDDQGHL TAKGKIMRGL GLPPRLAAMV IAAAEQGQAK TASDIAVLLT EQGLGGTDID LEERLRRFRS DRSERASAAR KLAERLTKDL PKRQAAATPA LAGVLLLHAY PDRIALKRGA PGRYVMANGR GAELAQTERL AASDMLVIAD LTGRAAQGRI LSAAEIRLSD IEESLPAAII QGDESFFDPP SGQVRARRVK RIGAIILEET PLGRPSGEGA TKALAEGLRQ LGLERLDFSK NAEQLRQRIG FLHRTLGTPW PDMSDEALLD RLEDWFIPFQ TGVRSLADIS MGGIIDGLKA LVPYEAQRDL DQMAPTHFTA PTGMSHPIQY DGDEPKLTIR VQELFGLKNH PAIGGGRLPL LLELTSPAHR PIQTTRDLPG FWTGSWSDVR ADMRGRYPRH PWPDDPAAAA PTTRAKPRGT
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