Gene Avi_0031 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0031 
SymbolhslU 
ID7389030 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp24029 
End bp25336 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content59% 
IMG OID643649774 
ProductATP-dependent protease ATP-binding subunit HslU 
Protein accessionYP_002547998 
Protein GI222147041 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1220] ATP-dependent protease HslVU (ClpYQ), ATPase subunit 
TIGRFAM ID[TIGR00390] ATP-dependent protease HslVU, ATPase subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAACTT TTTCACCCCG CGAAATCGTC TCGGAACTGG ACCGCTATAT TATTGGTCAG 
AACGATGCAA AGCGTGCCGT GGCGATTGCG CTGCGCAACC GCTGGCGCCG CCAGCAGCTC
GATGAGAGCC TGCGCGACGA GGTCATGCCC AAGAACATCC TGATGATCGG CCCGACCGGC
GTCGGCAAGA CCGAAATCTC CCGACGCCTC GCCAAACTGG CTGGCGCGCC CTTCATCAAG
GTCGAGGCCA CAAAATTCAC CGAGGTTGGC TATGTCGGCC GCGACGTGGA GCAGATCATC
CGTGATCTCG TGGAAATCGG CATCGGCCTG ATCAAGGAAA AGAAGCGGCT GGAGGTGGAA
GCCAAGGCCC ATGCCGGTGC CGAGGAGCGG GTGCTGGATG CGCTGGTTGG GGCAACGGCC
TCACCTGCCA CCCGCGATAG CTTCCGCAAG AAACTGCGGG CTGGAGAGCT GGACGACAAG
GAAATCGATA TCGAGGTTGC GGAGACAAGC TCCGGCATGC CGGGCTTTGA GATTCCCGGC
ATGCCGGGGG CCAATGTCGG CATTCTCAAC CTGTCCGACA TGTTTGGCAA AGCGATGGGC
GGCCGCACCA AGAAGGTCCG CACCACCGTC AAGACCTCTT ACGCCGATCT GATCCGTGAC
GAATCCGACA AGCTGATCGA CAATGAAGTG ATCCAGCGTG AAGCGGTGAA ATCGGTTGAA
AACGACGGCA TCGTCTTCCT GGACGAAATC GACAAGATCG CCAACCGCGA AGGCGCCATG
GGTGCGGGTG TTTCGCGCGA AGGTGTGCAG CGCGACCTGC TGCCCCTGGT GGAAGGCACG
ACGGTTGCGA CCAAATACGG GCCAGTGAAG ACCGACCACA TCCTGTTTAT CGCATCCGGG
GCCTTCCATG TCTCCAAGCC ATCCGACCTG CTGCCGGAAT TGCAGGGCCG TTTGCCGATC
CGCGTTGAGC TAAAGGCACT GACCAAGGAA GACTTCCGCC GGATTTTGAC GGAAACCGAA
GCCAGCCTCA TTCGTCAATA CATCGCGCTG ATGGCCACTG AACAGTTGGA TCTCGAGTTT
ACCGAGGATG CCATCGACGC ACTGGCGGAT GTTGCCGTCA ACCTCAACAG CTCGATTGAA
AACATCGGTG CGCGGCGTTT GCAGACGGTG ATGGAGCGGG TGCTCTACGA CATTTCCTTC
AATGCGCCGG ATCGCGGCGG GGCGAAAGTG ATGATCGATT CGGCCTATGT GCGCGAGCAT
GTCGGCGAAA TCGCTGCCGA TGCGGATCTG TCGCGCTATA TTCTGTGA
 
Protein sequence
MTTFSPREIV SELDRYIIGQ NDAKRAVAIA LRNRWRRQQL DESLRDEVMP KNILMIGPTG 
VGKTEISRRL AKLAGAPFIK VEATKFTEVG YVGRDVEQII RDLVEIGIGL IKEKKRLEVE
AKAHAGAEER VLDALVGATA SPATRDSFRK KLRAGELDDK EIDIEVAETS SGMPGFEIPG
MPGANVGILN LSDMFGKAMG GRTKKVRTTV KTSYADLIRD ESDKLIDNEV IQREAVKSVE
NDGIVFLDEI DKIANREGAM GAGVSREGVQ RDLLPLVEGT TVATKYGPVK TDHILFIASG
AFHVSKPSDL LPELQGRLPI RVELKALTKE DFRRILTETE ASLIRQYIAL MATEQLDLEF
TEDAIDALAD VAVNLNSSIE NIGARRLQTV MERVLYDISF NAPDRGGAKV MIDSAYVREH
VGEIAADADL SRYIL