Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0031 |
Symbol | hslU |
ID | 7389030 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 24029 |
End bp | 25336 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643649774 |
Product | ATP-dependent protease ATP-binding subunit HslU |
Protein accession | YP_002547998 |
Protein GI | 222147041 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1220] ATP-dependent protease HslVU (ClpYQ), ATPase subunit |
TIGRFAM ID | [TIGR00390] ATP-dependent protease HslVU, ATPase subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAACTT TTTCACCCCG CGAAATCGTC TCGGAACTGG ACCGCTATAT TATTGGTCAG AACGATGCAA AGCGTGCCGT GGCGATTGCG CTGCGCAACC GCTGGCGCCG CCAGCAGCTC GATGAGAGCC TGCGCGACGA GGTCATGCCC AAGAACATCC TGATGATCGG CCCGACCGGC GTCGGCAAGA CCGAAATCTC CCGACGCCTC GCCAAACTGG CTGGCGCGCC CTTCATCAAG GTCGAGGCCA CAAAATTCAC CGAGGTTGGC TATGTCGGCC GCGACGTGGA GCAGATCATC CGTGATCTCG TGGAAATCGG CATCGGCCTG ATCAAGGAAA AGAAGCGGCT GGAGGTGGAA GCCAAGGCCC ATGCCGGTGC CGAGGAGCGG GTGCTGGATG CGCTGGTTGG GGCAACGGCC TCACCTGCCA CCCGCGATAG CTTCCGCAAG AAACTGCGGG CTGGAGAGCT GGACGACAAG GAAATCGATA TCGAGGTTGC GGAGACAAGC TCCGGCATGC CGGGCTTTGA GATTCCCGGC ATGCCGGGGG CCAATGTCGG CATTCTCAAC CTGTCCGACA TGTTTGGCAA AGCGATGGGC GGCCGCACCA AGAAGGTCCG CACCACCGTC AAGACCTCTT ACGCCGATCT GATCCGTGAC GAATCCGACA AGCTGATCGA CAATGAAGTG ATCCAGCGTG AAGCGGTGAA ATCGGTTGAA AACGACGGCA TCGTCTTCCT GGACGAAATC GACAAGATCG CCAACCGCGA AGGCGCCATG GGTGCGGGTG TTTCGCGCGA AGGTGTGCAG CGCGACCTGC TGCCCCTGGT GGAAGGCACG ACGGTTGCGA CCAAATACGG GCCAGTGAAG ACCGACCACA TCCTGTTTAT CGCATCCGGG GCCTTCCATG TCTCCAAGCC ATCCGACCTG CTGCCGGAAT TGCAGGGCCG TTTGCCGATC CGCGTTGAGC TAAAGGCACT GACCAAGGAA GACTTCCGCC GGATTTTGAC GGAAACCGAA GCCAGCCTCA TTCGTCAATA CATCGCGCTG ATGGCCACTG AACAGTTGGA TCTCGAGTTT ACCGAGGATG CCATCGACGC ACTGGCGGAT GTTGCCGTCA ACCTCAACAG CTCGATTGAA AACATCGGTG CGCGGCGTTT GCAGACGGTG ATGGAGCGGG TGCTCTACGA CATTTCCTTC AATGCGCCGG ATCGCGGCGG GGCGAAAGTG ATGATCGATT CGGCCTATGT GCGCGAGCAT GTCGGCGAAA TCGCTGCCGA TGCGGATCTG TCGCGCTATA TTCTGTGA
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Protein sequence | MTTFSPREIV SELDRYIIGQ NDAKRAVAIA LRNRWRRQQL DESLRDEVMP KNILMIGPTG VGKTEISRRL AKLAGAPFIK VEATKFTEVG YVGRDVEQII RDLVEIGIGL IKEKKRLEVE AKAHAGAEER VLDALVGATA SPATRDSFRK KLRAGELDDK EIDIEVAETS SGMPGFEIPG MPGANVGILN LSDMFGKAMG GRTKKVRTTV KTSYADLIRD ESDKLIDNEV IQREAVKSVE NDGIVFLDEI DKIANREGAM GAGVSREGVQ RDLLPLVEGT TVATKYGPVK TDHILFIASG AFHVSKPSDL LPELQGRLPI RVELKALTKE DFRRILTETE ASLIRQYIAL MATEQLDLEF TEDAIDALAD VAVNLNSSIE NIGARRLQTV MERVLYDISF NAPDRGGAKV MIDSAYVREH VGEIAADADL SRYIL
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