Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0021 |
Symbol | trpA |
ID | 7389023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 16421 |
End bp | 17260 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649767 |
Product | tryptophan synthase subunit alpha |
Protein accession | YP_002547991 |
Protein GI | 222147034 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0159] Tryptophan synthase alpha chain |
TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCAGC GTATGGACAA ACGGTTCGCC GATCTGAAGG AAGAGGGCCG TCCGGCTCTC GTCACTTATT TCATGGGCGG CGATCCGGAT TTCGAAACGT CGCTCGCCAT CATGAAGGCC TTGCCGCAGG CTGGTGCCGA TGTGATTGAG CTTGGCATGC CGTTTTCCGA CCCGATGGCC GATGGTCCTG CCATTCAAAT GGCCGGTCAG CGCGCCCTGA AGGCCGGTCA GACCCTGGTA AAAACCCTGG ATATGGCGCG GGAATTCCGC AAAGGCGATC AGGCTACGCC GATCGTCATG ATGGGGTATT ACAATCCGAT CTATGTCTAT GGCGTCGAAA AATTCCTGGA TGATGCGCTG GACGCGGGCA TTGACGGTTT GATTGTCGTC GATCTTCCGC CGGAAATGGA CGATGAATTG TGCCTGCCAG CCCGCAAGCG CGATATCAAT TTCATTCGTC TGGCGACACC GACTACGGAT GAGAAGCGCC TGCCGATGGT GCTGCAAAAT ACCTCTGGAT TCGTCTATTA TGTATCGATG AACGGCATTA CAGGCTCGGC TTTGCCCGAT CCGTCCAAGG TTGCCGGTGC CGTCGGGCGG ATCAAGGCCC ATACCGATCT GCCGATCTGC GTTGGCTTCG GCGTGAAGAC GGCGGAACAT GCAAGGCTGA TTGGGGCCAG CGCCGATGGC GTCGTGGTCG GTACGGCCAT TGTCAATCAG GTCGCATTGA GCCTGACCAA GGATGATAAG GCGACGGCGG ATACGGTGCA ATCGGTGGTA ACCCTAGTGC GTGGGCTGGC AAGCGGCGTC CAGACTGCCC GGCTTGCGGC TGCGCAATAG
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Protein sequence | MTQRMDKRFA DLKEEGRPAL VTYFMGGDPD FETSLAIMKA LPQAGADVIE LGMPFSDPMA DGPAIQMAGQ RALKAGQTLV KTLDMAREFR KGDQATPIVM MGYYNPIYVY GVEKFLDDAL DAGIDGLIVV DLPPEMDDEL CLPARKRDIN FIRLATPTTD EKRLPMVLQN TSGFVYYVSM NGITGSALPD PSKVAGAVGR IKAHTDLPIC VGFGVKTAEH ARLIGASADG VVVGTAIVNQ VALSLTKDDK ATADTVQSVV TLVRGLASGV QTARLAAAQ
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