Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0020 |
Symbol | trpB |
ID | 7389022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 15199 |
End bp | 16419 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643649766 |
Product | tryptophan synthase subunit beta |
Protein accession | YP_002547990 |
Protein GI | 222147033 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0133] Tryptophan synthase beta chain |
TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACCAGA ACCCAATTCC GAATTCCTTC CGGTCCGGGC CGGATGAAGA TGGTCGTTTC GGCATTTTCG GAGGCCGCTT CGTGGCCGAA ACCTTGATGC CGCTGATCCT GGATCTGCAG GCGGAATGGG AAAATGCCAA GACCGACCCC AGCTTCAAGG CTGAACTCGA TCACCTCAAC ACCCATTATA CCGGGCGTCC GAGCCCGCTC TATTTCGCCG AGCGGCTGAC GGCGGAGCTT GGTGGCGCCA AGATCTATTT CAAGCGCGAC GAGTTGAACC ATACCGGTTC GCACAAGATC AACAATTGTC TCGGCCAGAT CCTGCTGGCC AAGCGCATGG GCAAGACCCG GATTATCGCC GAGACCGGCG CTGGCCAGCA CGGCGTGGCC TCGGCCACCG TCGCGGCTCG TTTCGGTCTG CCCTGCATCG TCTATATGGG TGCCACTGAT GTGGAGCGCC AGGCACCGAA CGTCTTCCGC ATGAAGCTGC TCGGTGCGGA AGTCCGCCCG GTGAGTTCAG GGCATGGAAC CTTGAAGGAT GCGATGAACG AGGCCCTGCG CGACTGGGTC ACCAATGTCG ATGAGACCTA CTACATGATC GGCACGGCTG CCGGTCCGCA TCCCTATCCG GAAATGGTCC GTGAATTCCA GTCGGTGATC GGCAAGGAAT CCCGCGAGCA GATGATGGCT GCCGAAGGCC GCCTGCCGGA TATGCTGGTG GCAGCTGTCG GCGGTGGCTC CAATGCCATT GGCCTGTTCC ATCCGTTCCT CGATGATGAG AGCGTGCGGA TGATCGGTGT CGAGGCTGGC GGCAAGGGGC TTGATGGCAA TGAGCATTGC GCCTCGCTGA CCGCAGGCTC CCCTGGCGTC CTGCATGGCA ACCGCACCTA TCTGCTGCAA GACAGCGACG GGCAGATCAA GGATGGCCAT TCGATTTCGG CCGGGCTTGA TTATCCGGGT ATCGGTCCGG AACATTCCTG GTTGAAGGAT ATCGGCCGGG TGGAATATGT GCCGATCATG GATACCGAAG CGCTGGAGGC TTTCCAGCTT CTGACCCGCA CCGAAGGCAT TATTCCGGCT CTCGAACCCA GCCACGCCCT GGCCGAGGTG ATGAAGCGCG CTCCGAAAAT GGGCAAGGAC GAGATCATCC TGATGAACCT TTGCGGACGC GGCGACAAGG ACATCTTTAC GGTCGGCAAG ATTCTGGGAA TGGGGCTCTG A
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Protein sequence | MNQNPIPNSF RSGPDEDGRF GIFGGRFVAE TLMPLILDLQ AEWENAKTDP SFKAELDHLN THYTGRPSPL YFAERLTAEL GGAKIYFKRD ELNHTGSHKI NNCLGQILLA KRMGKTRIIA ETGAGQHGVA SATVAARFGL PCIVYMGATD VERQAPNVFR MKLLGAEVRP VSSGHGTLKD AMNEALRDWV TNVDETYYMI GTAAGPHPYP EMVREFQSVI GKESREQMMA AEGRLPDMLV AAVGGGSNAI GLFHPFLDDE SVRMIGVEAG GKGLDGNEHC ASLTAGSPGV LHGNRTYLLQ DSDGQIKDGH SISAGLDYPG IGPEHSWLKD IGRVEYVPIM DTEALEAFQL LTRTEGIIPA LEPSHALAEV MKRAPKMGKD EIILMNLCGR GDKDIFTVGK ILGMGL
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