Gene Avi_6280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_6280 
Symbol 
ID7381319 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp1273920 
End bp1274630 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content54% 
IMG OID643649741 
Producttranscriptional regulator GntR family 
Protein accessionYP_002547965 
Protein GI222107174 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCTTG ACGAAAAAAT CAGTTTTCAC GATTCAAATT TGGAAGACCG TGCGTTCACC 
ATCCGCGAAT CCCTACGAAA TGCGATTATC GACCGGCGTT TAACACCCGG AACCAAGCTT 
TCCGAGGCGG AAGTGGGCCT TCTGTTCGAT GTCAGCCGGA CCGTTGTGCG CAGTGCTCTG 
CAAATGCTTG CATTCGAAGG GCTGATAAAG ACGGAACGAA ATAGGGGTGC TTTTGTATCC 
AATCCGAGCC CCGAAGAAGC AGTGCAGGTG TTTGCCTGCC GCCGAATGAT TGAACCTGGT 
ATTGTGCTGG CGGCTGTCGA GCGGCTGACG GAGGACGATC TGGTCGCTTT TCGTGCCCAG 
TTGGAAGATG AACAACACCA TCTGCACCAG CGCGGGCCTG CGGCGAGGCG TGCCGAAATA 
AAGGCCTCGG GCGATTTCCA TCTGATGCTG GCCAAAGTTG CCGGCAATGC CATCCTGCAA 
AAATTCATGG ATGAATTGGT GGCCCGATCA TCGTTGGTCA TCGCGCTGTA TGGTGGTTCC 
GGTGCGTCTA GTTGCGGTCA TAATGAGCAT GAACAGATAC TTGAGGCTCT TGTGGAGCGG 
GATGCCAAGC GTGCAAGTGC GCTGATGCTG CATCACATTG ATCATATCGA AGCGGATCTG 
GATTTGCGGG TGCGGGAAGG TCTGGCATTG AAGGATGCCT TGGGACTTTA G
 
Protein sequence
MKLDEKISFH DSNLEDRAFT IRESLRNAII DRRLTPGTKL SEAEVGLLFD VSRTVVRSAL 
QMLAFEGLIK TERNRGAFVS NPSPEEAVQV FACRRMIEPG IVLAAVERLT EDDLVAFRAQ 
LEDEQHHLHQ RGPAARRAEI KASGDFHLML AKVAGNAILQ KFMDELVARS SLVIALYGGS 
GASSCGHNEH EQILEALVER DAKRASALML HHIDHIEADL DLRVREGLAL KDALGL