| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6273 |
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| Symbol | |
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| ID | 7381313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1266820 |
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| End bp | 1268709 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643649735 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002547959 |
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| Protein GI | 222107168 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGATCA AGCTGCAAAA CAGGATCTTG GAAAAGATCG CCAGAGGCGA CCCCTTGGCA
GAGACCGTTG ATTTCCTCTG CTGGTCTGTT GAGGCGCTTA TTAATGATAT TGTCTGTTCC
GTTTTGACAT TGGACGATAC AGGGCGCCTT CAGCATCTTG CCGGTCCTTC CATTCCCGAG
CATTATTCCC AGGCGATCAA TGGCTTGGTC TGCGGCGAAG GTGTCGGTTC TTGCGGCACG
GCGGCGTTTC GCGGTCGTCC GGTCCTGGTG ACCGACATTG AGAACGATCC GTTCTGGGCT
GCGTTCAAGG GCCTTGCATT ACCACTGGGT TTTCTGGCGT GCTGGTCAAC GCCGATTATT
TCCGATGGCC GGGTATTGGG TACGTTTGCC TTCTATTTCC GCCAAAAACG CGGTCCGAGC
GAAATCGAAG AAAGCATTGT TTCTGCCTGT GTGCATCTTT GCGCAATTGG CTTGGAGCGC
GAGTTGCGGA TGAAGGAGCG CAGGCGGCTT GCCTATACCG ATGTGCTGAC GGGATTGCCA
AATCGCACGG GCTTCAATGA AGCCGTGATC AATGAAGATG TGGAGCGCAA TCCATGGGGA
TTGCTGCTGG TGGATCTCGA TAATCTCAAG CAGGTCAACG ATACATTCGG CCATCAGGCT
GGCGATGACC TGATCCGCAC CGTTGGTTTG CGCCTGAAAG CGATGACGGA TTCCGACACC
GCTTTCAGGC TCGGTGGTGA CGAGTTTGCT GTGATCGTCC GCGGCGTCGA TTGTGTGGAT
CTCGGCTACC ATGCGGCTCA TGTCCTGGCC GTGCTAAAAG AGCCCTGCAT TTGCGCAGGC
CAGACGGTTT ATCCAGCCGG AACCATTGGC GGTGCGGTCG CACGCAATGG GCAGAGCGTT
GACGATGTTC GCCAGAATGC CGATTTCGCG CTTTATGAAG CCAAGGAACG CTGCCGCGGT
CAGTTCGTTG AATATTCGGT TGGTTCAGTT TCGACGATAG CCCGCCGGTT CCGCTCTTTC
CAGCAGGTCA GCGAAGCATT GCGGGAACAG CGGATCGAGA CCTATTATCA GCCGGTGGTT
GATCTTGCTT CCGGTTCCCT GGTCGGGTTT GAGGCTCTCA GCCGGCTTGC CAGCCGTAAC
GGCGATATCA TCTCCGCCTC GCATTTTCAT GAAGCGACCA GTGATGTTCA TCTGGCCAGG
GCGCTGACGG CTTGCGTGTT GGAAAATGTG GCGCGGGATG CTCGCGATTG GCTGGACAGC
GGACTTGAGT TCGGCCGTAT CGGTTTGAAC GTATCGGCGG GCGATTTTCT GGACGGCTCC
CTGACTGAGC GGATAGTCGG CGCAATGGAC AAGGTTGGTG TTGGGGTAGA TAGAATTGTC
GTTGAATTGA CGGAGTCGAT TTATCTGGGA AATCGCGAGC GCAATGTGGT GGACCAGATC
AAGCAATTGC GTCAGGCAGG CATGCTTGTG GCTCTCGACG ATTTTGGCAC CGGTTTTGCG
TCCTTGACGC ATCTTCTGAC CGTTCCGCTC GATATCATCA AAATCGATCG CTCTTTCATT
GCCCGGTTGC TGGAGGAAGA GCCAGCATCG GTCATCGTCG GCGGGCTATT GTCGATTTCC
GACCGTTTGA ATTTCCGTGT CATCGCGGAG GGTATCGAAA CACAGGAGCA GCGTGATTTG
CTTTTGCGGC TGGGATGCGA GGAGGGGCAG GGCTATCTCT TCTCCAAGGC GGTGGATCGC
AAGGAAGCGG CAGCCATGTT GCGCCGCAAG TCTCTGGACC AACTTCCATC GGTATTGCGG
AACTCTTTAA ATGCACGCTT TTTCAATGAC CTATCTGCTG ATTCTCGGCA GCTTTGTCTG
CCGATAAAAC AGCCGGCTCG AACGCTTTAA
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| Protein sequence | MLIKLQNRIL EKIARGDPLA ETVDFLCWSV EALINDIVCS VLTLDDTGRL QHLAGPSIPE
HYSQAINGLV CGEGVGSCGT AAFRGRPVLV TDIENDPFWA AFKGLALPLG FLACWSTPII
SDGRVLGTFA FYFRQKRGPS EIEESIVSAC VHLCAIGLER ELRMKERRRL AYTDVLTGLP
NRTGFNEAVI NEDVERNPWG LLLVDLDNLK QVNDTFGHQA GDDLIRTVGL RLKAMTDSDT
AFRLGGDEFA VIVRGVDCVD LGYHAAHVLA VLKEPCICAG QTVYPAGTIG GAVARNGQSV
DDVRQNADFA LYEAKERCRG QFVEYSVGSV STIARRFRSF QQVSEALREQ RIETYYQPVV
DLASGSLVGF EALSRLASRN GDIISASHFH EATSDVHLAR ALTACVLENV ARDARDWLDS
GLEFGRIGLN VSAGDFLDGS LTERIVGAMD KVGVGVDRIV VELTESIYLG NRERNVVDQI
KQLRQAGMLV ALDDFGTGFA SLTHLLTVPL DIIKIDRSFI ARLLEEEPAS VIVGGLLSIS
DRLNFRVIAE GIETQEQRDL LLRLGCEEGQ GYLFSKAVDR KEAAAMLRRK SLDQLPSVLR
NSLNARFFND LSADSRQLCL PIKQPARTL
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