| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6266 |
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| Symbol | rhaS |
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| ID | 7381306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1259165 |
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| End bp | 1260160 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649728 |
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| Product | rhamnose ABC transporter rhamnose-binding protein |
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| Protein accession | YP_002547952 |
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| Protein GI | 222107161 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02637] rhamnose ABC transporter, rhamnose-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.569594 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATTT CTAGACGATT GTTCGGTGCG GCGGCGATTG CCTTCGTCAC GACGGTGGGT
ATGGCGCATG CTGCCGACAT GAAAGTCGCC ATCGTGGTCA AATCGCTTGG CAACGGCTTC
TTCGAGGCGG CCAATAAAGG CGCGGAAGAG GCGGCCAAGG AACTGGGTGG CGTCAAGATC
ATCTATACCG GTCCGACCAC AACGACTGCG GAAGGCCAGA TCGAGGTGAT CAATTCCCTG
ATCGCGCAGG GCGTTGATGC CATCGCTATT TCCGCCAATG ACCCGGATGC CGTGGTTCCT
GCTCTGAAGA AAGCTGCGCA GCGCGGCATC AAGGTGATTT CCTGGGATTC CGGCGTGGCG
CCTGCTGGCC GTATCATGCA TCTCAACCCG TCTTCGAACG AGTTGATCGG CAAGATGTGC
CTGAAACTGG CCGCCGACCA TCTGGCTGAT GGCAAGGGCG ATTTCGCCAT CCTGTCGGCC
ACCACCACCT CGACCAACCA GAATATCTGG ATTGCCGAGA TGAAGAAGCA GTTGAAGGAT
TTCCCCGGTC TTAACCTCAC CACCACTGTC TATGGTGATG ACCTTGCCGA CAAGAGCTAC
CGTGAAGCCA ATGGCATCCT GACCTCCCAT CCGAATGTGA AGGTTATCGT TGCTCCGACC
ACGGTCGGCG TCTTGGCGGC CTCGCAGGCA GTGAAGGACG CTGGCAAGAT CGGTCAGGTC
TATGTGACCG GTCTTGGCCT GCCATCGGAA ATGGCTGGTG CAATCAAGTC CGGTGCCACC
AAGGAATTCG CGATCTGGAA CCCTATTGAT CTCGGCTATT CGGCCACCCA GATCGCCTAT
CATCTGGTGA AAGGTGACGC GACCGGCAAG CCCGGCAGCG AGGTTCCCGC TGGAAGAATG
GGCAAGATCA AGATCGGCGA GAATGGTGAA GCGGCGATGG CTGATCCCTT CGTCTACGAT
GCCAAGAATA TCGATCAGTT CTCAAAAATC TTCTGA
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| Protein sequence | MKISRRLFGA AAIAFVTTVG MAHAADMKVA IVVKSLGNGF FEAANKGAEE AAKELGGVKI
IYTGPTTTTA EGQIEVINSL IAQGVDAIAI SANDPDAVVP ALKKAAQRGI KVISWDSGVA
PAGRIMHLNP SSNELIGKMC LKLAADHLAD GKGDFAILSA TTTSTNQNIW IAEMKKQLKD
FPGLNLTTTV YGDDLADKSY REANGILTSH PNVKVIVAPT TVGVLAASQA VKDAGKIGQV
YVTGLGLPSE MAGAIKSGAT KEFAIWNPID LGYSATQIAY HLVKGDATGK PGSEVPAGRM
GKIKIGENGE AAMADPFVYD AKNIDQFSKI F
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