| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6263 |
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| Symbol | rhaI |
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| ID | 7381303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1254654 |
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| End bp | 1255946 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649725 |
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| Product | L-rhamnose catabolism isomerase |
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| Protein accession | YP_002547949 |
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| Protein GI | 222107158 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4952] Predicted sugar isomerase |
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| TIGRFAM ID | [TIGR02629] L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.290662 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGACC TGAACATCAC TGCGGACGCG GTTGCCGCAG ACAATGACAA GCGGACAAGC
GCGCTGACGT CGGACTATAG CGCGCTTGGC GAAAAGCTGG CGCGCAGCAA TATCGACATC
GACGCCATCA CCAAATCCGT CTCCGCGTTT TTCGTCGCCG TCCCCTCCTG GGGAGTCGGC
ACCGGCGGCA CACGCTTTGC CCGCTTTCCC GGACTAGGCG AGCCGCGTCA TATCTTCGAC
AAGCTCGACG ATTGCGGCGT CATCCAGCAA TTGACCCGTG CCACACCGAA AGTCTCGCTG
CACATCCCCT GGGACAAGGC CGATCCTAAG GAATTGACGG CCAAGGCCGC CACTCTTGGC
CTTGGCTTCG ACGCCATGAA TTCCAACACA TTTTCGGACG CCGCTGATCA GGCCCATTCC
TACAAATACG GGTCGCTCAG CCATGTTGAC GCCGCAACCC GTCAACAGGC CATCGAACAC
AATATCGAAT GTATCGAACT TGGCGATCAG CTTGGCTCTA AAGCCCTGAC CGTCTGGATC
GGTGACGGCT CCAATTTCCC AGGCCAGAGC AATTTTACCA AGTCATTCGA GCGCTACCTC
GCGTCGATGG CCGAGATCTA CAAAACGCTG CCGGATGATT GGCGGCTATT TTCCGAACAC
AAGATGTATG AACCGGCCTT CTATTCCACC ATCGTTCAGG ATTGGGGCAC CAACTACCTG
ATTGCCCAGA CGCTGGGGCC GAAGGCACAG TGCCTTGTCG ATCTCGGACA CCACGCGCCT
AATACCAATA TTGAAATGAT CGTGGCGCGG CTGATCCAGT TCGGCAAGCT CGGCGGCTTC
CACTTCAACG ACTCGAAATA TGGCGATGAC GATCTGGATG CCGGTTCCAT CGACCCTTAC
CGCTTGTTTC TGGTGTTCAA CGAGCTTGTC GATGCGCAGT ATCGCGGCGT TGAAGGCTTC
CACCCTGCCC ATATGATCGA CCAGTCGCAT AATGTGACTG ATCCGATTGA AAGCCTGATT
GCCAGCGCAA ACGAAATCCG CCGGGCTTTT GCCCAGGCCC TGCTGGTGGA TCGCGCCGCA
CTGGACGGCT ATCAGAATGA TAATGATGCG CTGATGGCAA CCGACACGTT GAAACGCGCC
TATCGCACCG ATGTGGAGCC GATCCTGGCA AAGGCCCGGC TGGACGCAGG CGGCGCAATC
GACCCGGTCG CGGCTTATCG TGCCTCCGGT TACCGCGCCA AAGTTGCGGC AGAACGGCCA
GCGGTCAAAG GAGGCTCTGG CGGCATCGTA TAG
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| Protein sequence | MTDLNITADA VAADNDKRTS ALTSDYSALG EKLARSNIDI DAITKSVSAF FVAVPSWGVG
TGGTRFARFP GLGEPRHIFD KLDDCGVIQQ LTRATPKVSL HIPWDKADPK ELTAKAATLG
LGFDAMNSNT FSDAADQAHS YKYGSLSHVD AATRQQAIEH NIECIELGDQ LGSKALTVWI
GDGSNFPGQS NFTKSFERYL ASMAEIYKTL PDDWRLFSEH KMYEPAFYST IVQDWGTNYL
IAQTLGPKAQ CLVDLGHHAP NTNIEMIVAR LIQFGKLGGF HFNDSKYGDD DLDAGSIDPY
RLFLVFNELV DAQYRGVEGF HPAHMIDQSH NVTDPIESLI ASANEIRRAF AQALLVDRAA
LDGYQNDNDA LMATDTLKRA YRTDVEPILA KARLDAGGAI DPVAAYRASG YRAKVAAERP
AVKGGSGGIV
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