Gene Avi_6251 details

Gene Information

• Locus tag: Avi_6251
• ID: 7381292
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1241649
• End bp: 1243568
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643649714
• Product: beta-N-acetylhexosaminidase
• Protein accession: YP_002547938
• Protein GI: 222107147
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3525] N-acetyl-beta-hexosaminidase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGAAG TCGCTTTTCG TCTGGACAAT GCTTGGTATC CTATCGAGGG CGATGACGGC 
GGTGGTTTCG TCTTCACCCT CTACAACTTA TCGTCCGAGC CTGTCAGCGG TTTCAAGCTT 
GCCTATACGG CCTTGACGCG GGTGAAGGAC GACCCGGTCT GCGACAACGC AGTTTTCCTG 
CGACGCAACG CCAATTTTCA CCAGTTTGCA CCACCGGAAG GCCTGGTTTT GGCGCCAGGA 
GGGTGCTGGC GGTTTACGGT TCAGGGCCTC TGGCGGCCCG CTCGACATCG CACGGATGGT 
GCGAAATCAG CTTATTTGAC TCTTGCCGAT GGACGTCATG TCGTCGTCTC CGTCGATGAT 
CTGATGCTGC AAGGCCGGGT GAGCGCCCCC GCGCCAGTTC TGTTGCCGAA GGGAGAGGTT 
AGCAAGCCTT TTTCGCTGCT GCCGTGGCCC GTCGAGGCGA ACCTTGCGGC GGGCGATGGC 
TTTCCGGTGG CGATCTATCC CGCCAAGGGT ACGGATCTTT CCGGCTTACA GGCGATTGAG 
CGGGTCAATG CACTTTACCG GCGGCTATTT ACAGTCGGCC ATGTGCCATT TTCGCTGGCG 
CCGGTCGATC AGGGCAAAGC CTTGAAACTC GCCCATGATC CAGCACTCGG CGCATCTGCC 
TATTGGCTCG ATTTTGCTGA GGAGATTACG CTGTCCTTTG GGGATGAGGC GGGACGGCAA 
TATGGACTGA CAGCATTGGC GCAAATGCTG CATGGCGCAA GACAAGATCC CGCGCAGTTC 
AGGTTTCCGG TCTCCGGCCA GATCAAGGAT GCGCCGCGTT ATGGCTGGCG CGGCTGCCAT 
CTGGATGTGT CCCGGCAATT TTATCCGACG CAGGACGTGC TGCGGCTGAT CGATATCATG 
GCCTGGATGA AGCTGAATAT TTTCCACTGG CATCTGACCG ATGACGAAGC TTGGCGGTTG 
GAAATCAAGG CCTATCCGCA ACTCACGACT GTTGGCGTGC TGCGTGGCCC GGATGAACCG 
ATGTTGCCGC AGCTTGGCAA TGGCGCGGAG CCGGTCGGTG GTTTTTACAC CCAGGAGGAT 
GTTGGCCACA TCGTCGCCCA TGCCGCCTTG CTGCATGTTG AGGTCGTGCC TGAGATCGAT 
ATTCCGGGTC ATAGCACCGC GATCTTGACG GCCTTGCCTG AACTGGTCGA TGGCCAGGAA 
GCGCCTGACA GCTACCGCTC CGTCCAAGGC TATCCGAATA ACGCGCTCAA CCCTGCCATT 
GAGCAGACCT ATGTGTTTCT CGGCAAGGTT TTGGATGAGA TGGCGACGCT GTTTCCCTCC 
GATCTCGTGC ATGTCGGTGG TGATGAGGTT GCGGCCAATA CCTGGATGGC CTCGCCATTG 
GCAAAAAAGC TGATGGAGCA GGAGGGCATT GACGGCACAT TCGGGCTGCA AAGCCATTTC 
ATGAAGCGCA TTCAGCAGAT GTTGAAAGAC CGCGGCAAGA AACTGGCTGG TTGGGACGAA 
GTATCCCACG GCGGCGGTGT CGATCCGCAG GGAACGCTGC TGATGGCCTG GCAGAAGCCG 
GAGGTAGGAC TGGATCTGGC GCGGCAGGGC TATGACGTGG TGATGACGCC CGGACAGGCC 
TATTATCTCG ACATGGTGCA GGACGAGGCG TGGCAGGAGC CGGGCGCCAG CTGGGCCGGC 
ACCGTGCCGC CGCACCATAC CTATACCTAT GAAGCCGTCG CGGAATTTCC TGAGGAATTA 
AAGCCTAGGA TGCGGGGTGT GCAGGCCTGT ATCTGGTCGG AGCATTTCCT GAACCGGGAT 
TACTTCAACC ACCTGGTCTT TCCGCGCCTG CCGGCTGTTG CCGAGGCCGC CTGGACCCCT 
AGGCATCAGA AGGAGTGGCT GCGCTTTGCA GCTCTCGCGC CGCTGATGCC ACGTTTTTAA 

 

Protein sequence

MTEVAFRLDN AWYPIEGDDG GGFVFTLYNL SSEPVSGFKL AYTALTRVKD DPVCDNAVFL 
RRNANFHQFA PPEGLVLAPG GCWRFTVQGL WRPARHRTDG AKSAYLTLAD GRHVVVSVDD 
LMLQGRVSAP APVLLPKGEV SKPFSLLPWP VEANLAAGDG FPVAIYPAKG TDLSGLQAIE 
RVNALYRRLF TVGHVPFSLA PVDQGKALKL AHDPALGASA YWLDFAEEIT LSFGDEAGRQ 
YGLTALAQML HGARQDPAQF RFPVSGQIKD APRYGWRGCH LDVSRQFYPT QDVLRLIDIM 
AWMKLNIFHW HLTDDEAWRL EIKAYPQLTT VGVLRGPDEP MLPQLGNGAE PVGGFYTQED 
VGHIVAHAAL LHVEVVPEID IPGHSTAILT ALPELVDGQE APDSYRSVQG YPNNALNPAI 
EQTYVFLGKV LDEMATLFPS DLVHVGGDEV AANTWMASPL AKKLMEQEGI DGTFGLQSHF 
MKRIQQMLKD RGKKLAGWDE VSHGGGVDPQ GTLLMAWQKP EVGLDLARQG YDVVMTPGQA 
YYLDMVQDEA WQEPGASWAG TVPPHHTYTY EAVAEFPEEL KPRMRGVQAC IWSEHFLNRD 
YFNHLVFPRL PAVAEAAWTP RHQKEWLRFA ALAPLMPRF