| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6249 |
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| Symbol | |
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| ID | 7381290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1239973 |
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| End bp | 1240836 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649712 |
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| Product | transcriptional regulator RpiR family |
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| Protein accession | YP_002547936 |
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| Protein GI | 222107145 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00357056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATCT TTGCCACCAT ACAGGAAGAT CGCGCGCAAT TTTCGCCTTC CGAACAGCGG
ATTGCCGACA TTCTCCTGAG TGAGCTGGAT TTTGCCGTCG GCGCATCGAT CATCGAGCTG
GCCGAGCGGG CGCAAGTGTC GCCGCCGACG GTGACCCGTT TTTGCCGCAG GCTTGGGTGC
CAGAGCTTTT CGGATTTCAA GGTCAATCTG GCCAAGACTG CCTATGTCGG CGTGCGTTAT
CTGAACCCGG AAGCGAAAAG CACTGAGCCG CAGGATGTTG CTGAGGATGT GATCACCAAG
GCGCAGAACG CGCTGTTCAT GATGCATCGC TCTCTCGACG CAGTTATGAT CGAAAAGGTT
GCGGACCGGA TTTCGCGGGC TGAGATGATC TACGCGTTCG GCTCGGGCGG CAATTCCTCA
ATGATTGCCT CGGAATTGCA AAACCGGCTG TTTCGGCTGG GGTCACGGGT CACGGCTTGC
AACGATCACC ATATGCAATT GATGCTGACA GCGGCGGCGC GCAGCAATGA TATCATTGTC
GGATCATCCT TCTCGGGCCG CAATCTGGAG CTGGCGCGCT GTTTCGAGCT GGCGCGTGAC
AACGGCATTA CAACGATTGC CCTGACCCAG AGTGACAGCG CTGTCGCCAA GGCTGCCGAG
CTGGTCGTTG GTATCGATCT GCCGGAGGGC GACAATATCT TTCGTCCGAC ATCGACCCGC
TTTGCCTATC TGGCCATGGT CGATGTCATC GCCAGTCTGG TTGCCTATCG CAATCGCAAG
CTTTCCATGG TGACGCTGCG CCACATCAAA CAACAATTGG TCGAACATCG CGATGGCGAC
GACCGTCAGA TTCTGGGAGA CTAG
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| Protein sequence | MDIFATIQED RAQFSPSEQR IADILLSELD FAVGASIIEL AERAQVSPPT VTRFCRRLGC
QSFSDFKVNL AKTAYVGVRY LNPEAKSTEP QDVAEDVITK AQNALFMMHR SLDAVMIEKV
ADRISRAEMI YAFGSGGNSS MIASELQNRL FRLGSRVTAC NDHHMQLMLT AAARSNDIIV
GSSFSGRNLE LARCFELARD NGITTIALTQ SDSAVAKAAE LVVGIDLPEG DNIFRPTSTR
FAYLAMVDVI ASLVAYRNRK LSMVTLRHIK QQLVEHRDGD DRQILGD
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