| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6224 |
|---|
| Symbol | exsH |
|---|
| ID | 7381271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 1218532 |
|---|
| End bp | 1219959 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643649693 |
|---|
| Product | endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein |
|---|
| Protein accession | YP_002547917 |
|---|
| Protein GI | 222107126 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.380521 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGCA AATATCTTCT CAACAGCTTG GGGGAGGCGC TTTATTATAG CGGCGATCCG
ACCCACTGGT ATTCAGCCAC GGGCAGTGGC CTGACGCTGA ATGGATCAAG CGGCAACGAT
GCAATGTATG GGGATAGCTC GGTCAATGTC ACCATGAATG GTGGCGCGGG CGACGATGTC
TATTATCTCT ATTCCAGTAT TAATCGAGCC AGTGAATCAG GGGGGGCGGG TGTTGACACA
GTCAATACCT GGATGAGTTA CACGCTTGGT GATGGCATTG AAAACCTGGT CGTGACAGGC
GATAACCGCT ATGCTTTCGG CAACAGCCTG AACAACATCA TCACCGGCGG CACAGGTATC
CAGACCATTG ACGGCTATGG TGGCAACGAT GTCCTGATCG GCGGCGGCGG CGCCGATACT
TTTGTATTCA GCAGCGGCAA TGGCAGCGAC AGGATCACTG ATTTCTCCAG CGATGATACC
GTGCGCTTGC AGAATTATGA TTTCTCGGAC TTTACCGAGG TGCAAAGTCA TATGACCCAG
ACAGGAAGTG ATGTTTCACT CGACCTCGGC AATGGCGAAA GCATCCTATT CAGCGATACC
GTAATTTCTG ATTTTACCTC CGACCAGTTT CAGTTGACAC TGGATCGTAC CAATCTCACG
CAAACATTTT CAGATGATTT CAACAGCTTG TCCCTGCATG ACGGAACGAG CGGAACGTGG
GATACCGGCT ATAGCTGGTT TGCGTCCAAT GGCGGCACCT TGGTCGATAA CAGCGAGTTG
CAGTGGTATA TCAATCCGTC CTATGAGGGG ACGTCGTCGG TTAATCCATT CTCTATCTCT
GACGGGGTGT TGACCATCAC CGCATCCGTT GCTTCGGAAG ATATCCAGAG CCAGATCAAT
GGCTATGAGT ATACCTCGGG CATGCTCAGC ACTGAGTCCA CGTTTAGCCA GACCTATGGT
TATTTTGAAA TCCGCGCCGA TATGCCTGAT GATCAGGGCG CATGGCCGGC ATTCTGGCTG
CTGCCGGCGG ACGGGAGTTG GCCACCGGAA CTGGATGTGG TTGAAATGCG TGGCCAGAAT
CAAGGCGAAG TCATTGTCAC CGCGCACAGC AATGAAACTG GCGAACAAAC ATCCGATGCC
ACGACGGTTT ACACCGATAC CGAAGGCTAT CATACCTACG GCGTGTTGTG GACGGAAACG
ACGTTGACCT GGTATATTGA TGACGTTGCC GTGCATCAAA CGGATACGCC GTCAGATATG
CATGAGCCGA TGTATATGGT GGTCAATCTG GCGGTTGGCG GGATGGCTGG GACGCCAAGC
AGTTCTGATT TCAGCGATGG CTCAGAGTTG AAGGTCGACT ATATCAAGGC CTATTCCCTT
GATGAGTATG CGGCGGCCAC CACAACGACC ACCGATCATC TTCTTTAA
|
|---|
| Protein sequence | MASKYLLNSL GEALYYSGDP THWYSATGSG LTLNGSSGND AMYGDSSVNV TMNGGAGDDV
YYLYSSINRA SESGGAGVDT VNTWMSYTLG DGIENLVVTG DNRYAFGNSL NNIITGGTGI
QTIDGYGGND VLIGGGGADT FVFSSGNGSD RITDFSSDDT VRLQNYDFSD FTEVQSHMTQ
TGSDVSLDLG NGESILFSDT VISDFTSDQF QLTLDRTNLT QTFSDDFNSL SLHDGTSGTW
DTGYSWFASN GGTLVDNSEL QWYINPSYEG TSSVNPFSIS DGVLTITASV ASEDIQSQIN
GYEYTSGMLS TESTFSQTYG YFEIRADMPD DQGAWPAFWL LPADGSWPPE LDVVEMRGQN
QGEVIVTAHS NETGEQTSDA TTVYTDTEGY HTYGVLWTET TLTWYIDDVA VHQTDTPSDM
HEPMYMVVNL AVGGMAGTPS SSDFSDGSEL KVDYIKAYSL DEYAAATTTT TDHLL
|
|---|
| |