Gene Avi_6193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_6193 
Symbol 
ID7381247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp1195854 
End bp1196540 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content59% 
IMG OID643649669 
Productouter capsid protein Hoc 
Protein accessionYP_002547893 
Protein GI222107102 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTGCAT CTGAGGCACA AATCGCCCTC GGCCTTGTTG TCGAAATGGC GGATGAGGCA 
ACGCCCGCCA CGCGGACCTA TCTTGCCGAG GTGACGGATA TCACCCCGCC AAGCGAAACC 
ACCGACACGG TGGATGTAAC GCACCAGCAA AGTGCCAACC GCTACCGCGA ATTCATTGAC 
GGTCTGACTG ATGGCGGCGA TTTTTCCTTC GACATGAATT ATGTCGCCGG ATCGGCTTCG 
GACGTTTATC TGCGGGCCTC ACGCAACAAG TCGAAGTGGG TCTACATCAC CTTTCCGAGC 
GGTCATCAGC TTATCTTCAA GGGCAAGCGC ACCGGTTACG AAATCAGCGC TTCGCTTGGC 
GACAAGCAGA CCGTGACCGT AACCTTCAAG GTTTCCGGCG AACCGGTGCT GACCGGCGCT 
ACCGCGCCGC GCTCCATTGT TGCGCCTGCT GTGGTCGGCA CGCCGACCGT TGGCGCGCCT 
TTGACGCTTG ATCCGGGCGT ATGGGCTGGA GCCATGGAGC AAACCTATCA GTGGAAGGTG 
GATGGGACGG CGGTCAGTGG TGCGACCAGT TCGACCTATG TGCCAGTTAC GGCAGATATC 
GGCAGCCCTG TGACCTGCAC GGTGAAGGGG GAGAATGACG ACTTTGAAAC GTCCGTCACC 
TCGGCTGCAA CCGCTGATGT AGCGTGA
 
Protein sequence
MPASEAQIAL GLVVEMADEA TPATRTYLAE VTDITPPSET TDTVDVTHQQ SANRYREFID 
GLTDGGDFSF DMNYVAGSAS DVYLRASRNK SKWVYITFPS GHQLIFKGKR TGYEISASLG 
DKQTVTVTFK VSGEPVLTGA TAPRSIVAPA VVGTPTVGAP LTLDPGVWAG AMEQTYQWKV 
DGTAVSGATS STYVPVTADI GSPVTCTVKG ENDDFETSVT SAATADVA